Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06964 ATGGATATCGAGGAGGACATTCGTTCTTTACAGCTTGACTCAGCAGCAGAAGACAATAATGGGATGGTAAATCCAGAGGATGGAAAGCCAGAAGTTGAGAAATCTGATGAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCACAGGCTGTTGAAGCTGAGCCCAAAGGTATTGGGAAATGTATTTTGTTTTCAATGAAAGATAAGGAAATTCCTTCTGTTCAAGAAGAAGAAGAAGAGCCGGAGTTGATGAAAAGACACTTGAATGTTGTGTTTATTGGCCATGTCGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAAAGGACCATCCAAAAATATGAGAAGGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGATACAAATGAGGAGGAGAGGATAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAGACAACGAGGTTCACCATTCTGGATGCACCTGGTCACAAAAGCTATGTTCCTAATATGATAAGTGGTGCTTCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAACATGTCCAGCTTGCAAAAACACTGGGTGTGGCTAAGCTACTTGTTGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGATATGATGAAATTGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTTGTTTTTACCAATATCGGGGCTTATTGGCTCGAACTTAAAAACGAGATTGGATAAAAGCACTTGTTCATGGTGGGATGGGCCTTGCTTATTTGAAGCCCTTGATGCTGTTGAAGTTCCTTTACGAGATCCCAAAGGCCCATTTAGGATGCCCCTAATTGACAAATTCAAAGACATGGGAACTGTTGTCATGGGCAAAGTGGAATCTGGTACTATTCGCGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCTATATATATTGATGAAGATCGGGTTAAACGTGCTGGACCTGGTGAAAATATACGGGTTAGAATATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTATCCTGTGTAGTGTTGCAAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAATTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTCTTGCAACAAATTGATCCAAAGACAAGGAAGCCTATGAAAAAGAAAGTTCTCTTCGTGAAGAATGGCGCTGTTGTAGTATGCCGTGTTCAGGTTAATAACATGATATGCATTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGGAAAACTGTCGCTGTGGGGAAAGTCACTGGTCTGTGA 1536 0.4141 MDIEEDIRSLQLDSAAEDNNGMVNPEDGKPEVEKSDEMDEDPKQEVQAQAVEAEPKGIGKCILFSMKDKEIPSVQEEEEEPELMKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGSNLKTRLDKSTCSWWDGPCLFEALDAVEVPLRDPKGPFRMPLIDKFKDMGTVVMGKVESGTIREGDSLLVMPNKDQVKVVAIYIDEDRVKRAGPGENIRVRISGVEEEDILSGFILCSVANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTRKPMKKKVLFVKNGAVVVCRVQVNNMICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06964 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 320 IPR027417 -
Seca12g06964 511 MobiDBLite consensus disorder prediction 1 52 - -
Seca12g06964 511 PANTHER TRANSLATION FACTOR 77 509 - -
Seca12g06964 511 MobiDBLite consensus disorder prediction 27 47 - -
Seca12g06964 511 CDD eRF3_II 316 397 - -
Seca12g06964 511 Gene3D Translation factors 404 511 - -
Seca12g06964 511 Pfam Elongation factor Tu C-terminal domain 402 510 IPR004160 -
Seca12g06964 511 CDD EF1_alpha 89 309 - -
Seca12g06964 511 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 65 309 - -
Seca12g06964 511 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 141 156 IPR031157 -
Seca12g06964 511 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 406 510 IPR009001 -
Seca12g06964 511 Gene3D - 66 309 IPR027417 -
Seca12g06964 511 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 313 399 - -
Seca12g06964 511 PRINTS GTP-binding elongation factor signature 168 178 IPR000795 GO:0003924|GO:0005525
Seca12g06964 511 PRINTS GTP-binding elongation factor signature 228 237 IPR000795 GO:0003924|GO:0005525
Seca12g06964 511 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Seca12g06964 511 PRINTS GTP-binding elongation factor signature 184 195 IPR000795 GO:0003924|GO:0005525
Seca12g06964 511 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 314 IPR000795 GO:0003924|GO:0005525
Seca12g06964 511 Pfam Elongation factor Tu GTP binding domain 85 287 IPR000795 GO:0003924|GO:0005525
Seca12g06964 511 SUPERFAMILY Translation proteins 308 401 IPR009000 -
Seca12g06964 511 CDD eRF3_C_III 403 511 - -
Seca12g06964 511 FunFam Putative translation elongation/initiation factor family protein 403 511 - -
Seca12g06964 511 Gene3D Translation factors 314 399 - -
Seca12g06964 511 Pfam Elongation factor Tu domain 2 329 396 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06964 Seca-Chr12 161612384 161621922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06964 85 506 Eukaryotic Initiation Factors Gene Family AT5G60390 37.647 1.06e-95 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06964 K03267 - gmx:100793653 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06964 12 161612384 161621922 Seca12g06964 12 161612384 161621922 ECH