Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06961 ATGGCAGAGCTGGATCCGTCCAAAAAAGTAGCCGATAGATATCTGAAACGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTATACAAAGCCATAGATACCCAAACAGGACAGACGGTTGCTATTAAGAAAATCCGGCTTGGCAAGCAGAAAGAAGGTGTAAATTTTACAGCTCTTAGAGAAATTAAACTGCTAAAAGAGCTCAAAGACCCTAACATTATTGAGTTGATCGATGCATTCCCACACAAAGGAAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATACGAGACCGAAATATTTTCCTTTCACCAGCTGATACAAAATCTTACCTTCAAATGACACTAAAAGGTCTTGCTTTTTGCCACAAGAGATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCTAACGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGTCCAGATAGAAGATTCACTCATCAGGTTTTTGCGCGGTGGTATAGAGCTCCTGAACTATTATTTGGTGCCAAGCAATATGGTTCGGGGGTTGACGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCATTTTTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGGACTCCAACACCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTTGAATACCAATATGTTCCTGCCCCACCTTTGCGTTCTTTATTTCCAATGGCAAGTGAAGATGCTTTAGATCTGTTGTCAAAAATGTTTACATATGATCCAAAATCTAGAATTTCAGTGCAGCAGGCACTAGAGCACAGGTACTTTTCTTCTGCACCTCTGCCTACGGATCCAGACAAGCTCCCTAGACCTGCCCCCAAGAGGGAATCCACCATTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTGTCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGATTTGAAGGAAATTCTGTGCAAGCAGATAAGGTTGATGGCAATTTTGGTGATTTCAGACAAACAATTGGTGATAATACAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCCAACAGCCAGAATGA 1248 0.4095 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKRWVLHRDMKPNNLLIGPNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASEDALDLLSKMFTYDPKSRISVQQALEHRYFSSAPLPTDPDKLPRPAPKRESTISDFNLQEGPTVLSPPRKSRRVMPGRDGFEGNSVQADKVDGNFGDFRQTIGDNTGKNESAPMSVDFSIFGLKPPNRPTINSADRSHLKRKLDLEFQQPE. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06961 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06961 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06961 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca12g06961 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Seca12g06961 415 MobiDBLite consensus disorder prediction 398 415 - -
Seca12g06961 415 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Seca12g06961 415 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Seca12g06961 415 FunFam Cyclin-dependent kinase D-1 5 94 - -
Seca12g06961 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Seca12g06961 415 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Seca12g06961 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Seca12g06961 415 MobiDBLite consensus disorder prediction 383 415 - -
Seca12g06961 415 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Seca12g06961 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06961 415 MobiDBLite consensus disorder prediction 294 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06961 Seca-Chr12 161587639 161591874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06961 4 411 Core Cell Cycle Gene Families AT1G73690 75.980 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Seca12g06961 Pkinase 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06961 K02202 - gmx:100776618 785.023