Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06945 ATGCCTGTTGTCACAACAGAGGCAACAAAAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAGCCACCACCACCACCCCATTTCAGAAACAGATCCAAACCCACCAATCCCTCATCCCATTATCCAATCCACACGGTGCAAGTCCACCATTTCTTCTCTGCTCCTCTCCAATGAAACCAGCACCATCAATGACAATGTCCGGAGCAGGAAAAAAAGCAACTTTTCTGCAGCAACCTTCAGAGGGTTCGGGTGCACCGCCGGTTCTTCTCAGCAGGTGTCAGTGCCGGCGGTGATTCGCGCCTCCGCGGATTGGCAAGGGAAGAAAGCCAGAAAAAAGAAGCACAAGAGCAACAAGAACAGTAGCAGCAGCAAGGCTTGCCATGGTGGGGTTATAGATGGTTCAGCTACTTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCGGATGCTGCTGCCTCTGTTGACTACGTTGTGTCTAGGAAGAATGTGTCTGCAAGGGGTAAAATTGATGTGGACAAGATCACTCACAGTCACAGGGAGGCAGGAAGACCCACAACAAGATTTGCTGCTATCTATGGACAGGCTGCATTAATTGATCTTAAGAATACATGTCAATGGTTAGTTGGGTTTTTGCTTGATTTGTGCTTATCTAATTATCCATCTTCTTCAGCTTTATCATCATTTTGGTTTGAAAATGCCTTTGTACTAACCAACCCTGCTTTGCTTTATTATCATAACAAATGTTGGCAGCGACGTTCATCTTCTCTTGGAAGGGGCACTGTCTCGTTTTCGGACACTGATCCTGATTTTCCTGAGATGATAATGCTTCAAGGAAGTATACTTATGGGGGGACGATTAAATTCACATGACCATTTCAGAGAATGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTGGAGCTTGGTGAGAGAATTGGTTATGTGAACACTGGACTGAAAGAAGATGAGATGGGATGTAACATAAGGAAGACCAAGCTTCAAGGTTTGAATGATGCATCAAAGAATCAAGTAGACAAAAAGTGTAGCATTTGTCAGGAGGAGTATGAAGCAGATGATGTGCTGGGGACACTAAACTGTGATCACAGCTATCACTTTCATTGTATACAGCAATGGGTTGCACAGAAAAATTTCTGTCCAGTATGTAAGAAACAAGTTGCCGCTCGACACTGA 1227 0.4442 MPVVTTEATKTVAEHIKWRRPRNQFSHHHHPISETDPNPPIPHPIIQSTRCKSTISSLLLSNETSTINDNVRSRKKSNFSAATFRGFGCTAGSSQQVSVPAVIRASADWQGKKARKKKHKSNKNSSSSKACHGGVIDGSATCVDFQDVWCGPGIGFSADAAASVDYVVSRKNVSARGKIDVDKITHSHREAGRPTTRFAAIYGQAALIDLKNTCQWLVGFLLDLCLSNYPSSSALSSFWFENAFVLTNPALLYYHNKCWQRRSSSLGRGTVSFSDTDPDFPEMIMLQGSILMGGRLNSHDHFREWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGCNIRKTKLQGLNDASKNQVDKKCSICQEEYEADDVLGTLNCDHSYHFHCIQQWVAQKNFCPVCKKQVAARH. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06945 408 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Seca12g06945 408 SMART ring_2 360 400 IPR001841 -
Seca12g06945 408 MobiDBLite consensus disorder prediction 111 125 - -
Seca12g06945 408 Pfam Ring finger domain 359 401 IPR001841 -
Seca12g06945 408 SUPERFAMILY RING/U-box 359 405 - -
Seca12g06945 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 407 IPR013083 -
Seca12g06945 408 MobiDBLite consensus disorder prediction 107 130 - -
Seca12g06945 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 33 405 IPR045191 GO:0061630
Seca12g06945 408 MobiDBLite consensus disorder prediction 22 42 - -
Seca12g06945 408 FunFam E3 ubiquitin-protein ligase rnf12-A 327 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06945 Seca-Chr12 161431389 161435498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06945 12 315 C3H Transcription Factor Family AT1G73760 35.312 3.69e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06945 - - gmx:100788837 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04846 10 111763386 111765573 Seca12g06945 12 161431389 161435498 ECH
Seca12g06945 12 161431389 161435498 Seca12g06945 12 161431389 161435498 ECH