Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06944 ATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGCAATTTGAACCCTAGCTCCACCTCCTCTCCTCGTCGTCCATTGCAGGGTGGGTGCGCGGCACAGACCTCGACCTCCAAATTTCGGCGTAAACCCAATCCGCGAGGGATCGTAATCGCGATGGGGAAGAAGAAGAAGAGAGTTTCTTCCAAAGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTTCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGTCTGTCACAAGAAGCTCTCCACCGCTGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCGAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGTATTCCACCAGATATCTTGGCTGCTCATTATGGAGAAGAAGATGATGACGTTCCATCGAAGGCAGCCAAGGTGGATATCCCAACTACCCAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGGTACAGGATATCCTCCTCGATCAACCTTGGGAACAATTCCACCAATTTACAATCCTGCTGTACCTGTGCCTCCAAATGCATGGGCAGTTCCACCTCGACCTCAGCCATGGTTTCCACAGCCTCCAGCTGCTTCCATTCCTCCCCCTGTCCCATACGTACAGCAGCCATTATTTCCTGTGCAGACTGTAAGGCCACCATTGCCATCTACTATTACACCTGCACTCCAAACTCAGATTACACCTCCTGGATTACCTACATCTACACCTTCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACGACTCAAAGTTCTACATTTACAACTGCACCTCTGTCTTCAAGTGTTCCATCGATAACTCCCGCACTGTCTTCAAATGTCCCTGTTGATGCCAATTCTTCTGTTACAAGTAGCTATCAGGCAATAGGGGTTCCAGGTGGGACAGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAATACCGGCGGGCCTTCAATTGGACCTCCCCCAGTAATTGCAAACAAAGCTCCTGTTTCTCAGCCTGCCACTAATGAAGTCTACTTGGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTACCAAAATATCAGGTGCATGATGAAAGTACCCAGGTAAGTCATACTAACTCTGCAATACATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAATTGTTTACGCTTTGTTTCGTATTTAAAGAGGTACATTCTGTATAA 1332 0.4625 MQKKKKKKKKKKKESNLNPSSTSSPRRPLQGGCAAQTSTSKFRRKPNPRGIVIAMGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEDDDVPSKAAKVDIPTTQLVGGMVPPPLGTGYPPRSTLGTIPPIYNPAVPVPPNAWAVPPRPQPWFPQPPAASIPPPVPYVQQPLFPVQTVRPPLPSTITPALQTQITPPGLPTSTPSVPVSQPLFPVVGNNHTTTQSSTFTTAPLSSSVPSITPALSSNVPVDANSSVTSSYQAIGVPGGTASNSHSYASGPNTGGPSIGPPPVIANKAPVSQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESTQVSHTNSAIHGVAFTSNQMSRLYASCFQIQLFTLCFVFKEVHSV. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06944 443 ProSitePatterns Zinc finger C2H2 type domain signature. 68 89 IPR013087 -
Seca12g06944 443 PANTHER ZINC FINGER PROTEIN 207 55 410 - -
Seca12g06944 443 SMART c2h2final6 66 89 IPR013087 -
Seca12g06944 443 SMART c2h2final6 90 113 IPR013087 -
Seca12g06944 443 MobiDBLite consensus disorder prediction 335 355 - -
Seca12g06944 443 Gene3D Classic Zinc Finger 52 116 - -
Seca12g06944 443 ProSitePatterns Zinc finger C2H2 type domain signature. 92 113 IPR013087 -
Seca12g06944 443 CDD SUF4-like 67 146 - -
Seca12g06944 443 MobiDBLite consensus disorder prediction 1 50 - -
Seca12g06944 443 MobiDBLite consensus disorder prediction 17 44 - -
Seca12g06944 443 ProSiteProfiles Zinc finger BED-type profile. 61 120 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06944 Seca-Chr12 161423147 161427170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06944 55 422 C2H2 Transcription Factor Family AT1G30970 62.078 1.21e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g06944 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06944 - - gsj:114413692 614.764