Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06938 ATGCAGATGATGTTCGTTGACGAAGAGGGTGGCAGGATTGAGGGGACTGTCCAGAAGCACAACATGCAGAAGTTCAATTGGTGCATGGTTGAGGGCCAAGTTTATAAGGTGTCGAAGTTTGGAATCATCCGCAATGGGGGCAAGTTTCAAGCTGTTGGGCATGATTATAAGATAATGTTCAACTCTAATGCACAAGTTTCCCCTTGCCCAGAAGCTTCGATTCCATTCCTTGGGCTATCTTTCACCAAAACCTCTGATATCAAGAAGACGAAAGGCTCTTCAGACTACCTATTTGACTTCATGGGAATGTTAGCGGGAGTATCAGAGGAGATACGATTAAACAAGGAGGAGAGGGTTACCCGTTTGGTATTATTGGACTTGGTGGACGACATGGGTACCATCCGGTGTGCCCTTTTTGGTAGCATTGTTGGTACTGTTATTGAATGCCTCTCTCAGCCTCAGACGGGACTTCCCGTTGTCATTATCCAACTAGCCAAGATAAATATCTACAAGGGCCAAGTTGGTGTTCACAATGTTATGAATGCGACTAAAGTCTGGTGGAATCCTCTTTATACCCGAGTGTATTGA 588 0.4507 MQMMFVDEEGGRIEGTVQKHNMQKFNWCMVEGQVYKVSKFGIIRNGGKFQAVGHDYKIMFNSNAQVSPCPEASIPFLGLSFTKTSDIKKTKGSSDYLFDFMGMLAGVSEEIRLNKEERVTRLVLLDLVDDMGTIRCALFGSIVGTVIECLSQPQTGLPVVIIQLAKINIYKGQVGVHNVMNATKVWWNPLYTRVY. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06938 195 CDD RPA1_DBD_A_like 3 66 - -
Seca12g06938 195 SUPERFAMILY Nucleic acid-binding proteins 93 189 IPR012340 -
Seca12g06938 195 SUPERFAMILY Nucleic acid-binding proteins 3 73 IPR012340 -
Seca12g06938 195 Gene3D - 1 71 IPR012340 -
Seca12g06938 195 Pfam Domain of unknown function DUF223 3 90 IPR003871 -
Seca12g06938 195 Gene3D - 72 195 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06938 Seca-Chr12 161364352 161366330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06938 5 195 Core DNA Replication Machinery Family AT2G06510 24.242 5.90e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06938 - - lja:Lj6g3v0884310.1 155.992