Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06936 ATGGTGAAACCTGAACTGGGTTTTGGAGGTTCTTTCATTTTTGGTATAGTTTTTGTGCTTTCTGTTGTGGTTATTCCATGTAGGTGTCAGGATGCAGAGGTGATGGTCCTTTTGAGGAACATGATCAATGCCCCCATTAGCTTCCAATGGACAGACCCAGATGTTTGTAAATGGAGACATGTTCAATGTGATGCAATGAAACGTGTTACTGATATTCAAATTGGGAACCAGAATCTTCAAGGCTCTCTCCCCAAGGAACTTGAGAAGTTAACAGAGTTGCGACGGTTTGAGTGCCAACACAATGGTCTCACAGGGCCATTCCCTTACCTTTCACAATCCTTAAAGACGATGGTAATCCATGACAACAAGTTCAGCAGCATACCCAATGATTTATTCAAGGGGATGAGTAGTTTGGAAGAAGTGAGAATCGATGACAACCCTTTCCCTCAGTGGCAGATTCCCGAGGCTCTCAAAGAATGCGTCTCACTTCAAACTTTCAGTGCTCAGAATGTTGGCTTTGTTGGGACTATCCCAGATTTTTTTGGCAAAAATGGTCCCTTTCCAGGTTTGGCTTTTTTGGCCTTGTCTGGTAATTTTCTTGAAGGAGGGTTACCTGCACGCCTCTCAGGTAGTTCAATAGAGACCCTTTTGGTGAATGGACAAAATAGCAACTCTAAACTCAATGGTACCCTTGCTGTGTTACAGAACATGACATCTTTGACACAAATTTGGGCTAATGGTAACTCATTTATGGGTCCTATACCTGACTTGTCACACCTTGATAAACTGTCTGATTTGAATTTAAGGGATAACCAGTTAACTGGTGTTGTTCCACCTTCCCTCACGGGTCTTCAAAGTCTACAGGTTGTGAACTTAACCAACAATAATCTTCAAGGATCCCCTCCCAAGTTCAGAGATGGGGTAGCTGTTGATAATAATATGGATAAGGGGAGAAATCAATTTTGCACAAACATGCCAGGGCAGCCATGTAGTCCTCTTGTGAATGCTTTACTATCTGTTGTTGAACCTTTGGGGTATCCTCTCAAGTTTGCTGAAAGTTGGCAGGGTAATGATCCATGTGCTAATAAATGGACTGGGATAGTTTGCTCTGGTGGAAACATTTCAGTTATCAATTTTCAGAACATGGGTCTATCTGGGACTATTTCTCCTAGTTTTGCCAGCCTTACATCTGTCACAAAATTGCTTCTTGCTAACAATGGTCTCACTGGTACCATACCAAGTGAACTCACTAGTATGCCTCTTCTGCAGGAGTTTGATGTTTCCAATAATCATTTATATGGCCATGTCCCATCATTCCGTAAAGATATGGTTCTCAAATTAGGTGGGAATCCTGATATTGGAAAGGATAAACCTTCTTTTTCACCTGGCTCTGGTTATGGTTTTGGTGGCAATTATAGTAACGGACTAAGTGCTGGAGCCATTGTTGGGATTGTGGTAGGGGTTGTCATTTTACTTGGTATTGGGGCTTTAATGTTTATGAAGTTCAGAGGAAAGTTGAAGCATACTAAAAAGGTTCAAAATCCAACAGCAATTGTGGTACATCCTAGGCATGGTGGGGATGGGGATGCTGTGATGATACATGAAGATATGGTAATTTCAATTCAAGTTTTGAGACAAGTTACTGATAATTTTTGTGAGGACAACATAGTGGGGAAGGGGGGTTTTGGCACCGTATACAAAGGAGAATTACATGATGGGACAAAGATTGCAGTGAAAAGGATGCAAACTGGGGTGGTGGATGAGAAAGGGCTGATTGAGTTCACTTCTGAAATTGCAGTGCTCACTAAGGTTAGACACAGACATTTGGTTGCATTGTTGGGGTATTGCTTGGATGGAAATGAGAGACTTCTTGTCTATGAGTATATGCCTCAGGGTGCTTTTAGTAAACATTTGTTCAACTGGAAAGAGGAAGGGATAAAACCACTGGAATGGAAGACAAGGCTTAGTATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTTACAGAACAAATTTTTATCCATAGGGATCTCAAACCATCCAACATTTTGCTTGGAGATGATATGCATGCTAAAGTATCAGACTTTGGATTGGTTCGCCTTGCTCCTGAAGGAAAAACCTCATTTCAAACTAGACTTGCTGGAACTTTTGGATATATGGCACCTGAGTATGCAGCCACTGGACGACTCACAACAAAGGCTGATGTATATAGTTTTGGAGTGATTCTTATGGAAATGATAACGGGAAGGAAAGCACTTGATGAAAGCCAACCAGAAGAGAATGTTCACCTTGTTACATGGTTCCGTAGGATGCTACTGAACAAAGATTCATTTCAAACAATCATAGACCCAACAATTGAAGTTGATGAGGAAACCTATGCCAGTATTAACACTGTTGCTGAGTTAGCTGGGCACTGCAGTGCAAGGGAACCATATCAGAGACCTGACATGAGTCATGTAGTGAGTGTGCTATCACCTCTTGTTGAGGTGTGGAAGCCCACAGAAGCAGATGCTGATGACATATATGGAATCAATTTGAATATGACATTACCAGAAGCACTACAAAGGTGGCAAGCTTTTGAAGGAAGAAGCACTGTGGACTTCACTTGTTCTCCTTCAACAGTGCATACAATTAGTGAAGACACAACAAACTCCACTCGCCCATCAGCAATGATTGCAGGTTCCTTTCCATCTTCAGATGGACGATGA 2718 0.418 MVKPELGFGGSFIFGIVFVLSVVVIPCRCQDAEVMVLLRNMINAPISFQWTDPDVCKWRHVQCDAMKRVTDIQIGNQNLQGSLPKELEKLTELRRFECQHNGLTGPFPYLSQSLKTMVIHDNKFSSIPNDLFKGMSSLEEVRIDDNPFPQWQIPEALKECVSLQTFSAQNVGFVGTIPDFFGKNGPFPGLAFLALSGNFLEGGLPARLSGSSIETLLVNGQNSNSKLNGTLAVLQNMTSLTQIWANGNSFMGPIPDLSHLDKLSDLNLRDNQLTGVVPPSLTGLQSLQVVNLTNNNLQGSPPKFRDGVAVDNNMDKGRNQFCTNMPGQPCSPLVNALLSVVEPLGYPLKFAESWQGNDPCANKWTGIVCSGGNISVINFQNMGLSGTISPSFASLTSVTKLLLANNGLTGTIPSELTSMPLLQEFDVSNNHLYGHVPSFRKDMVLKLGGNPDIGKDKPSFSPGSGYGFGGNYSNGLSAGAIVGIVVGVVILLGIGALMFMKFRGKLKHTKKVQNPTAIVVHPRHGGDGDAVMIHEDMVISIQVLRQVTDNFCEDNIVGKGGFGTVYKGELHDGTKIAVKRMQTGVVDEKGLIEFTSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGAFSKHLFNWKEEGIKPLEWKTRLSIALDVARGVEYLHGFTEQIFIHRDLKPSNILLGDDMHAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKADVYSFGVILMEMITGRKALDESQPEENVHLVTWFRRMLLNKDSFQTIIDPTIEVDEETYASINTVAELAGHCSAREPYQRPDMSHVVSVLSPLVEVWKPTEADADDIYGINLNMTLPEALQRWQAFEGRSTVDFTCSPSTVHTISEDTTNSTRPSAMIAGSFPSSDGR. 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06936 905 Gene3D Ribonuclease Inhibitor 29 328 IPR032675 -
Seca12g06936 905 MobiDBLite consensus disorder prediction 877 905 - -
Seca12g06936 905 Pfam Protein kinase domain 554 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06936 905 SMART serkin_6 551 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06936 905 FunFam receptor protein kinase TMK1 518 628 - -
Seca12g06936 905 SUPERFAMILY L domain-like 26 304 - -
Seca12g06936 905 Gene3D Phosphorylase Kinase; domain 1 524 628 - -
Seca12g06936 905 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Seca12g06936 905 FunFam Receptor-like kinase TMK4 29 327 - -
Seca12g06936 905 SUPERFAMILY Protein kinase-like (PK-like) 531 836 IPR011009 -
Seca12g06936 905 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Seca12g06936 905 SMART LRR_typ_2 284 306 IPR003591 -
Seca12g06936 905 SMART LRR_typ_2 112 134 IPR003591 -
Seca12g06936 905 SMART LRR_typ_2 395 419 IPR003591 -
Seca12g06936 905 SMART LRR_typ_2 260 283 IPR003591 -
Seca12g06936 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Seca12g06936 905 PANTHER OSJNBA0070M12.3 PROTEIN 15 905 - -
Seca12g06936 905 FunFam receptor protein kinase TMK1 629 846 - -
Seca12g06936 905 ProSitePatterns Protein kinases ATP-binding region signature. 557 579 IPR017441 GO:0005524
Seca12g06936 905 Pfam Leucine rich repeat N-terminal domain 335 370 IPR013210 -
Seca12g06936 905 Pfam Leucine rich repeat N-terminal domain 30 64 IPR013210 -
Seca12g06936 905 ProSiteProfiles Protein kinase domain profile. 551 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06936 905 Gene3D Transferase(Phosphotransferase) domain 1 629 846 - -
Seca12g06936 905 SUPERFAMILY L domain-like 334 443 - -
Seca12g06936 905 CDD STKc_IRAK 557 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06936 Seca-Chr12 161351102 161355262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06936 66 830 Receptor kinase-like Gene Family AT5G65700 32.331 2.13e-85 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca12g06936 Pkinase 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06936 - K00924 gmx:100788903 1315.83