Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06933 ATGGCTGCTGCTGCAGGAGCAATGGAGCAAGTGCAATGCTTTGGAAGGAAGAAGAATGCAGTCGCAGTTACTTACTGCAAGAGAGGACGTGGTCTCATCAAGATCAATGGCTGCCCTATCGAGCTTGTGCAGCCTGAGATTCTCCGCTTCAAGGCCTTTGAGCCCATCCTTCTTCTCGGCAGGCACCGATTCGCCGGCGTCGACATGCGCATCCGCGTCAAGGGCGGTGGTCACACCTCACAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCTCTCGTTGCCTACTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGATATCCTTGTTCGCTATGACCGCACCCTCCTCGTCGCTGATCCCAGGCGCTGCGAGCCTAAGAAGTTCGGTGGTCGCGGTGCTCGTGCTAGGTTCCAGAAGTCCTACCGTTGA 444 0.5608 MAAAAGAMEQVQCFGRKKNAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06933 147 FunFam 40S ribosomal protein S16 4 147 - -
Seca12g06933 147 PANTHER RIBOSOMAL PROTEIN S9 8 144 IPR000754 GO:0003735|GO:0005840|GO:0006412
Seca12g06933 147 SUPERFAMILY Ribosomal protein S5 domain 2-like 10 147 IPR020568 -
Seca12g06933 147 ProSitePatterns Ribosomal protein S9 signature. 75 93 IPR020574 GO:0003735|GO:0005840|GO:0006412
Seca12g06933 147 Gene3D - 3 147 IPR014721 -
Seca12g06933 147 Pfam Ribosomal protein S9/S16 15 147 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06933 Seca-Chr12 161316918 161317361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06933 3 147 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 88.276 5.65e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06933 K02960 - gmx:100527911 283.108