Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06931 ATGAATAGCAGCTCCGGTTACTGTGATGATCACCATGACCTTCGATCTAATGAGAAGAATGTTTTCTGTATAGACTGTGCAGTTAGATTGTGTAGGCACTGTAAGGAAGCTCATTCCCTCCATAGAAGGTTTCAGATTTACAAATATTCCTATCAGGATGTCTTCCGCCATTCTGAGCTGCAGAAGTATTTTGATTGCGCAAAAATTCAGACTTACATATCCAATAATGAAAGGATTGTGCATCTCAAACCCCGGCCTTCAACCAATAAATCTAAATTTGCTGATCCATGCCCTGAGTCTAAATCCAAAGAAACCAACTTATCAAGGCCAAAATCAGGCGGTACTTGTGAAGAATGTGGAAAACACTTACAAGATGAGCGCAATCGCTTCTGCTCCATTATATGCAAGATATCAGTGCTTCCAGTGGAGCCCCAAAACCAAGGTCAAAATCACCATTCACAAAAGAGTGCAGTAGAGTCTGTCAACCAAAGTGCTAGATGCATCATCACTCCAAAGCCTGAAGCTATTGACTTTACTATGAATGATAACCATAATTCAGAACCGGAGTCATCTATCTCTGAAGCTGAGCCATATGAATGGGTTGAAGTGGTGAATTTCAGAAAGCGACCTAGAAAAGCCACACCTCAGAGGCCTATCTTTGTTTTCACCTCTTGA 675 0.4133 MNSSSGYCDDHHDLRSNEKNVFCIDCAVRLCRHCKEAHSLHRRFQIYKYSYQDVFRHSELQKYFDCAKIQTYISNNERIVHLKPRPSTNKSKFADPCPESKSKETNLSRPKSGGTCEECGKHLQDERNRFCSIICKISVLPVEPQNQGQNHHSQKSAVESVNQSARCIITPKPEAIDFTMNDNHNSEPESSISEAEPYEWVEVVNFRKRPRKATPQRPIFVFTS. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06931 224 MobiDBLite consensus disorder prediction 83 115 - -
Seca12g06931 224 Pfam PLATZ transcription factor 48 137 IPR006734 -
Seca12g06931 224 ProSiteProfiles Zinc finger B-box type profile. 3 46 IPR000315 GO:0008270
Seca12g06931 224 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06931 Seca-Chr12 161298396 161300933 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca12g06931 PLATZ 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06931 - - gmx:100815813 370.933