Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06926 ATGTCTCCTTCTCCAACAAAACATGATGTGTTCCTTAGCTTCCGCGTGGAAGACACGCGCAACGGTTTCACTGATCATCTCTATGCAGCCTTATGCCGTGAAAAGATTAAGACTTTTATGGATGACAGACTTGGTAGAGGCGAAGAGATTTCACCATTGCTTCACAAAGCAATAGAGGAATCAAATATTTATGTCATCATTTTCTCCCAACACTATGCTTCTTCCACGTGGTGTTTGGATGAACTCACCAAGATACTTGAATGCAAGAAGAGATATAAAAGGGATGTGATACCAGTTTTCTATAAGGTGGATCCATCAAATGTTAGGAATCAAAGAGGGAGTTATGGAGATGCATTTGTTAAGCATGTGCAACAACTTAAGGACAGAGTGAAGGGATGGAAAGATGCTCTGACCCAAGCAGCTGGATTACCAGGCTGGGGTTCAAGAAGAATCAGACCTGAATACCTACTTGTTCGAGAGATTGTTCAAGATATTTTGAGAAAATTGATGAACCGTTCTTCCACAATTGATGATCAAGGAATGATTGGAATTGAAAAGCACATTGCACCAATCAAGTCCTTGTTGCATGTTGAGTCAGCAGCTGTTCGGATCATAGGAATTTGGGGCATTGGGGGAATAGGCAAGACAACAGTTGCAGGTGCAATATATCATGAAGTGGCAACCCAATTCAGTTCCAGCAGCTTTGTTGCCAATGTTCATGAGGAAATAGAAAGATATGGATTGGACCATATGCAGAGCAGATATTTATCAGAGTCAAGTTTTTCAGATGAAAAGCTAAAACAGACAAAGGTTCTTCTTATTCTTGATAATGCCAACCATTCGAGTGAGATTAAAGATTTAATTGGAGGGCATGGTAGCTATGGCCCAGGAAGTAGAATCATTGTGACTAGTAGAGACATGCAAGTGCTAAAGGATGCTGAAGTAGATGAACTATATGAGGTTAAGGAGATGAGTTTTCAAGATTCTCTACAGCTTTTCAGTTTGAATGCTTTCAAGCAAAACTATCCAATAGAAAATTTTATGAGCTTGTCAAAAAAGGTATTGAATTATGCTAAAGGGATTCCATTAGTTCTCAAAGTTTTGGGCTCAATGCTATATGGCAAAACAAAGGAAGAGTGGGAAAGTGTATTGGAAAAGCTTGAAAATGTTCCTGATCTTGACACTTTTAATGTGTTAAAATTGAGTTATGATGGACTTGATGATGAAAAGAACATGTTTCTTAACATAGCATGTTTCTACAGAGGACATGATATGAATACTGTAATACAAGCATTGGATAGTTGTGGTTTCTCTGCTGCCATTGGATTGAGCCATCTTATTGATAGGGGCCTTATATCTATTTTGAAATGTGAAGTTGTGATGCATGATCTAATATGGGAAATGGGTCATGAAATTGTTCATCAACAATGTGTCAGTGATCCTGGAAAACGTAGTCGATTATGGAAGCATGAGGACATCTATCATGTTTTAAGAGAAAACAAGGGGACAGATGCAATCCAAGGTATATTCCTTGACATGTGCCAAATCAAAGAAGTTCAACTACATGCAGGAACTTTTAAAATGATGCATAATCTGAGAATTCTCCAGTTCTATAAGTCCAAATCAACTGAAAAATCAAATGTGCATATCCCTACATTTCTTGAAAGTTTTCCGGATGCTTTGCAATTTCTGTGTTGGGATGGCTTCCCTCAAAGATCACTGCCTCTGGACTTTCACCCAAAAAATCTTGTTAAGCTTGATATGTGTAACAGTCAACTTGAACAACTTTGGGGGAGAGATCAGCATTTGCCCAATTTGAAAAGGCTTGATCTTAGTGGATCTAAGAGCTTGGTTCAAATACCAGACCTTTCTCAGTCCCCAAATATTGAAGAAATCATTCTTAGTCATTGTGTGAGTTTGGTTCAAGTTTACTCCTCAAGTTTCCTCAAGAAGCTCAACTGTTTATGGTTAAATGGTTGCATTGGGCTAAGAAGTTTAAATCTTGCTAGCAATATTCTTTCAAAATCTTCTGGACTAATAGTCCTCTATGATTGTTGCAACCTTGAGATGTTTTCAATCAATAATATCACCATAGGGGCTCAGTTATATGGTTGTTCCCGAAGTAGATCAATTGAGAGTATATTCAGGAATAGTTTGCCTGGGGAAATATTTTGTTGTTTTAGAGATACAAAACCAAGGTCCCTATTTGAGAAATTCTCAGATACTTTTGACCCCATGGATAGTGATGATTTAGATGAAAAACAAGAGGATAACATACACTTACTAACCTTGAAAGTATTGAGAGAAGGCTCACCCTCATTATTTCCAAGTCTTAATGAGCTTTGTTGGTTAGATCTCTCTTACTGTGAATCCCTCTGGACCCTTCCAAGTGACATTTTCAAGTTGAAATTTCTAAAAAGACTTTACCTCCGTGGTTGCTCAAATTTTGAGAAGTTCCCTGAAATTGAGGAGACCATGGAAAATTTAATGGTGCTCATCTTAGACCAAACAGCAATACAAGAACTACCTTTGTCATTGCACCATTTGGTTGGGCTTGAAGAGTTGAGCTTACACATGTGCCAAAGGCTTAAGTTTATTCCACCTTCAATTGGAAGAGTCAGCAAGCTCTGCATGTTAGACCTTTCCTATTGTGAGTCACTTGAAACTCTTCCCAGCAGCATTTTCAAATTGAAGTTGACAAAACTTGATTTGCATGGTTGCTCAATGTTGAGGACCTTCCCAGAGATCATGGAGCCAGCAGAAAGTTTTGCACACCTTTGCTTAACAAAAACAGCAATTAAGGAAATACCTTCATCATTGGAGTATTTGGTTGGGCTTCAAACCTTGTGCCTGAACTTGTGCAAAGAGCTTGAGTTTCTTCCAAACAGCATTGGTAATGTAACACTTATCACCAAGCTTGATTTTTCAGGATGTGACAAATTATCAGAAATCCCAAGTGACATTGGCCACTTGTCATCACTCAGAGAACTGTCACTGCATGAAAGTGGTGTTGTTAACCTTCCTGAGAGTATTGCTCATCTGTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAGGCTTGAATTTATCCCTGAGCTTCCACCATTTCTAGAACACTTGTTGGCATTTGATTGTCCATCTATTAGAAGGGTGTCAAGTTCAAGTTTTAAAGTTTCATCAAATTCCAAAGAGGGTGTCTTCAAGTTTCATCTCACCAATAGTCAAGAACTTGATCCAAGTGCTCAAAGTAACCTTGTGATTGATGCATCACTTAGGATCACTGAGGATGCATATAGGTCTGTGTTCTATTGCTTTCCAGGGAATGCAGTTCCTCTTTGGTTCCCTTATAGTTGTAAGGGGCATTCAGTGACTCTGAATACAGATTCTCTAAATTGGTGCAATGGTAATAGGCTCATTGGTTTTGCTCTGTGTGTCATTTTAGGACTTGAAGGCATGCATGATGAAGAGAGAAGATATAGTGTTTTTAGCTACAGATTCACATTTGAATCAGATGATGGCATACACATTATTCCTAGCAATGATCAGCTAAGATACTATTTCAATTGGAAGGGCCGACAGAGATTTATTGTCCATGATCATACATTTCTCTGGAAATATTATTTGGATTCTTCAAGCATCACCCAAATGCTCTCTCATGCCCACAACTTCACTTTCGAGATCTGCAAGTATGATGTTGGTCGCTTTTGGCCAAATTATAGACCCACTTTCAAGGTAAAAGAATGTGGAATATCTCCTCTTTATGCAAAAGATCGATAA 3780 0.3841 MSPSPTKHDVFLSFRVEDTRNGFTDHLYAALCREKIKTFMDDRLGRGEEISPLLHKAIEESNIYVIIFSQHYASSTWCLDELTKILECKKRYKRDVIPVFYKVDPSNVRNQRGSYGDAFVKHVQQLKDRVKGWKDALTQAAGLPGWGSRRIRPEYLLVREIVQDILRKLMNRSSTIDDQGMIGIEKHIAPIKSLLHVESAAVRIIGIWGIGGIGKTTVAGAIYHEVATQFSSSSFVANVHEEIERYGLDHMQSRYLSESSFSDEKLKQTKVLLILDNANHSSEIKDLIGGHGSYGPGSRIIVTSRDMQVLKDAEVDELYEVKEMSFQDSLQLFSLNAFKQNYPIENFMSLSKKVLNYAKGIPLVLKVLGSMLYGKTKEEWESVLEKLENVPDLDTFNVLKLSYDGLDDEKNMFLNIACFYRGHDMNTVIQALDSCGFSAAIGLSHLIDRGLISILKCEVVMHDLIWEMGHEIVHQQCVSDPGKRSRLWKHEDIYHVLRENKGTDAIQGIFLDMCQIKEVQLHAGTFKMMHNLRILQFYKSKSTEKSNVHIPTFLESFPDALQFLCWDGFPQRSLPLDFHPKNLVKLDMCNSQLEQLWGRDQHLPNLKRLDLSGSKSLVQIPDLSQSPNIEEIILSHCVSLVQVYSSSFLKKLNCLWLNGCIGLRSLNLASNILSKSSGLIVLYDCCNLEMFSINNITIGAQLYGCSRSRSIESIFRNSLPGEIFCCFRDTKPRSLFEKFSDTFDPMDSDDLDEKQEDNIHLLTLKVLREGSPSLFPSLNELCWLDLSYCESLWTLPSDIFKLKFLKRLYLRGCSNFEKFPEIEETMENLMVLILDQTAIQELPLSLHHLVGLEELSLHMCQRLKFIPPSIGRVSKLCMLDLSYCESLETLPSSIFKLKLTKLDLHGCSMLRTFPEIMEPAESFAHLCLTKTAIKEIPSSLEYLVGLQTLCLNLCKELEFLPNSIGNVTLITKLDFSGCDKLSEIPSDIGHLSSLRELSLHESGVVNLPESIAHLSSLKSLDLSDCKRLEFIPELPPFLEHLLAFDCPSIRRVSSSSFKVSSNSKEGVFKFHLTNSQELDPSAQSNLVIDASLRITEDAYRSVFYCFPGNAVPLWFPYSCKGHSVTLNTDSLNWCNGNRLIGFALCVILGLEGMHDEERRYSVFSYRFTFESDDGIHIIPSNDQLRYYFNWKGRQRFIVHDHTFLWKYYLDSSSITQMLSHAHNFTFEICKYDVGRFWPNYRPTFKVKECGISPLYAKDR. 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06926 1259 Gene3D Ribonuclease Inhibitor 495 721 IPR032675 -
Seca12g06926 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 409 IPR027417 -
Seca12g06926 1259 SUPERFAMILY L domain-like 461 1035 - -
Seca12g06926 1259 Gene3D Ribonuclease Inhibitor 869 1079 IPR032675 -
Seca12g06926 1259 FunFam Disease resistance protein (TIR-NBS-LRR class) 325 407 - -
Seca12g06926 1259 SUPERFAMILY "Winged helix" DNA-binding domain 396 497 IPR036390 -
Seca12g06926 1259 Pfam Leucine Rich Repeat 582 601 IPR011713 -
Seca12g06926 1259 Gene3D - 324 407 IPR042197 -
Seca12g06926 1259 PRINTS Disease resistance protein signature 265 279 - -
Seca12g06926 1259 PRINTS Disease resistance protein signature 601 617 - -
Seca12g06926 1259 PRINTS Disease resistance protein signature 204 219 - -
Seca12g06926 1259 PRINTS Disease resistance protein signature 358 372 - -
Seca12g06926 1259 Gene3D - 172 318 IPR027417 -
Seca12g06926 1259 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 690 IPR044974 GO:0006952
Seca12g06926 1259 Gene3D Ribonuclease Inhibitor 758 868 IPR032675 -
Seca12g06926 1259 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 146 IPR035897 -
Seca12g06926 1259 Gene3D - 3 171 IPR035897 -
Seca12g06926 1259 ProSiteProfiles TIR domain profile. 6 169 IPR000157 GO:0007165
Seca12g06926 1259 Pfam C-JID domain 1106 1258 IPR045344 -
Seca12g06926 1259 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 171 - -
Seca12g06926 1259 Pfam NB-ARC domain 188 389 IPR002182 GO:0043531
Seca12g06926 1259 Pfam TIR domain 7 178 IPR000157 GO:0007165
Seca12g06926 1259 SMART till_3 7 143 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06926 Seca-Chr12 161246589 161251227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06926 780 949 WRKY Transcription Factor Family AT4G12020 35.882 4.36e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06926 - - aip:107633930 1750.72