Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06925 ATGTTGGGGAGTTCTTCTTCTTCTACGACTACTGTTATGTCTCCTCCTCCTCCGAAGCATGATGTGTTCCTCAGCTTTCGAGGGGAAGACACCCGTGACAACATCACTAGTCATCTTTATGCAGAGCTACGCAGGAAAAATATTGAAACATTCATAGATTACAGACTAGGCAAAGGTGAAGAGATTTCACCGGCACTCAACAAAGCAATAGAAGAATCCATGATTTATGTCATCATTTTCTCGGAAAACTATGCTTCTTCCACATGGTGCTTGGGTGAACTCACAAAGATACTGGAATGCAAAAATAGATACAGAAGGGATGTGATACCGGTTTTCTATAAGGTGGATCCATCAACTGTTAGGCATCAGAGAGGGAATTATGAAGAAGCATTTGCTAAGCATCAACAGCGATTTAAGGACGACATGGACAAAGTACTGCAAGCGTGGAAGGCTGCTCTAACCGAAGCTGCTCAACTCTCGGGCTGGGATTCACAAGTAACCAGACCAGAATCAACACTTGTTGCAGATATTGTGAAAGACATTTTGAGAAAATTGAATCATTCTTTTTTAAGTGATCATTATCAAGGAATAATTGGAATAGACAAGCATATGGCAAAAATCGAGTCCTTGTTGCACCTTGAGTCAGAGGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGAAAAACAACTATTGCTAATGCAGTATATCACAAACTGGCAACTCAATTCAATTCCAGCAGCTTTGTTTTAAATGTTCAGGAAAAGATAGAAAGAAAAGGAGCTTACTATGTACAAGAAAAATATTTGTCAGAGCTTCTAGAGGAAGATAACGGGAAAAGGTTTTTACATGATCAAAGGCTCAAACGGGCAAAGGTTCTCCTTGTCCTTGATGAAATATATCAAGTCAAAGAGATGAATTTTCAAGATTCTCTAAAACTCTTTAGTTTAAATGCCTTTAAACAGAACTGTCCCTTAGAAACTTGTGTGGGCTTATCAGAAAAGGTGTTAAATTATGCTAAAGGGGTTCCAATAGCTCTCAGAGTTTTAGGCTCATTGCTTTATGGTAAAACAAGAAAAGCATGGGAAAGTGAGTTGCAAAAGCTGGAAAAGCTTCCCGATAGTGAAATTTTCAATGTGTTGAAATTAAGTTATGAGGGGCTTGATGAGGAACAGAAGGATATATTTCTTGACATAACTTGCTTCTATAGAGGACATTTGGTGAATAATGTAGTAGAAACACTGGATGACTGTGGTTTCTCTGCTGACATTGGAATGGAAGTTCTCAAAGATAGGTGCCTTATATCAATTTCAGAAGGTAGGATTGTGATGCATGATCTAATACAGGAAATGGGCGAAGAAATTGTTCGTCAAGAATGTGTCAAAGATCCAGGAAAACGAAGTCGATTATGGAAGCCTGAGGAAATTTATCATGTCTTAAGAAAGAACAAGGGGACAGATGCAATTCAGTGTATATTCCTCGACTTATGGCAAATAGAAAAAGTTCAACTACATGCTGAAACTTTCAAATGCATGGATAATCTGAGAATGCTCCACTTCTATAGTTCTTATGGATTTTTTGAAAACATAATCGGGATCGATCCTGCACTTCTTCAAAGTCTTCCGAATGATTTAAAATTTCTTCGTTGGGATGGCTTCTCTCATAGATCTTTGCCACTGGACTTTAGGCCAGAAAGTCTTGTTACACTTGATATGCCTCATAGCCATCTCACTCAACTATGGGAGGGGGATCAGGATTTACCGAATTTGAAAAGGCTCGATCTTAGTTATTCTCGGGAGCTGATTCGAATACCAGACCTCTCTGTGTCCCCAAATATTAAAGAAATAATTCTCAGTCATTGTGTTAGCTTGGTTCAAGTTTATTCCTCAAATTCTTTTGACCCCATCGCTAGTACTGACAGATATGAAAAGGAAGAACTGGTGGATGGTACACACTTACTCAAAATTGAAGTAGTGAGAAAAACTATGCCCTCATCATTTCCAAGTCTTAATGGGCTTTGCTGGTTAGATCTCTCTAATTGTGAATCCCTCACAAGCCTTCCAATTGAGCTTTGTAAGTTGAAATTTCTAACAAGACTTTATCTCGACGGTTGCTCGAATTTGGAAAATTTCCCTGAAATTGAGGACACGATGCTCAGATTAGACGAAACAGCAATAAAGGAACTACCTTCATCTTTGCACCATTTGGTCGGGCTTGAAGAATTGAGCTTGAAAATGTGCCAAAGGCTTGAGATTATTCCATCTTCCATTGGGAGTCTCAGCAAACTCTGCAAGTTAGATCTTACCTACTGTGAGTCACTTGAAACTTTTCCAAGTAGTATTTTCAAATTGAAGTTGACAAAACTCGATTTGCATGGTTGCTCAATGCTAAAGACCTTCCCAGAGATCTTAGAGCCTGCAGAAACTTTTGTCTGTGTTAACTTAACAAGAACAGCAATTGAAGAGCTTCCTTCATCATTGGACTATTTGGTTGGGCTTCAAACCTTGCGTCTGAACTTGTGCAGAGATCTCGAGTCCCTTCCAAATAGCATTGTTAATCTAAGCCTTCTCTCCAAGCTTGATTGTTCAGGTTGTGTCAAATTAAGAGAAATCCCAAAGGATATTGGTCGCTTGTCATTATTAAGGGAATTGTCGCTGCAAGAAAGCGGAATTGTGAACCTTCCTGAGAGTATAGCTCATCTTTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAAGCTTGAATGTATCCCACAGCTTCCACCATTTCTAAAACAATTATTGGCATTTGATTGCCCATCCATTAGAAGAGTACTGATGTCAAATTCAAGGTTTAAACTCCCTTCAAATTCCTTCAAATTAGTCAAGAACTTAATGCAAGTGCTCATAGTAACATTGAGGGTGATCATGCATGGCTTAGGATCACCGAGGATGCATATAGGTCCGTGTTCTATTGTTTCCCAGGGAGTGCAGTTCCTCATTGGTTCCCATATCGTTGCGAGGGACATTCAGTAA 3024 0.3925 MLGSSSSSTTTVMSPPPPKHDVFLSFRGEDTRDNITSHLYAELRRKNIETFIDYRLGKGEEISPALNKAIEESMIYVIIFSENYASSTWCLGELTKILECKNRYRRDVIPVFYKVDPSTVRHQRGNYEEAFAKHQQRFKDDMDKVLQAWKAALTEAAQLSGWDSQVTRPESTLVADIVKDILRKLNHSFLSDHYQGIIGIDKHMAKIESLLHLESEAVRIIGIWGMGGIGKTTIANAVYHKLATQFNSSSFVLNVQEKIERKGAYYVQEKYLSELLEEDNGKRFLHDQRLKRAKVLLVLDEIYQVKEMNFQDSLKLFSLNAFKQNCPLETCVGLSEKVLNYAKGVPIALRVLGSLLYGKTRKAWESELQKLEKLPDSEIFNVLKLSYEGLDEEQKDIFLDITCFYRGHLVNNVVETLDDCGFSADIGMEVLKDRCLISISEGRIVMHDLIQEMGEEIVRQECVKDPGKRSRLWKPEEIYHVLRKNKGTDAIQCIFLDLWQIEKVQLHAETFKCMDNLRMLHFYSSYGFFENIIGIDPALLQSLPNDLKFLRWDGFSHRSLPLDFRPESLVTLDMPHSHLTQLWEGDQDLPNLKRLDLSYSRELIRIPDLSVSPNIKEIILSHCVSLVQVYSSNSFDPIASTDRYEKEELVDGTHLLKIEVVRKTMPSSFPSLNGLCWLDLSNCESLTSLPIELCKLKFLTRLYLDGCSNLENFPEIEDTMLRLDETAIKELPSSLHHLVGLEELSLKMCQRLEIIPSSIGSLSKLCKLDLTYCESLETFPSSIFKLKLTKLDLHGCSMLKTFPEILEPAETFVCVNLTRTAIEELPSSLDYLVGLQTLRLNLCRDLESLPNSIVNLSLLSKLDCSGCVKLREIPKDIGRLSLLRELSLQESGIVNLPESIAHLSSLKSLDLSDCKKLECIPQLPPFLKQLLAFDCPSIRRVLMSNSRFKLPSNSFKLVKNLMQVLIVTLRVIMHGLGSPRMHIGPCSIVSQGVQFLIGSHIVARDIQ. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06925 1007 Gene3D - 197 312 IPR027417 -
Seca12g06925 1007 Pfam TIR domain 19 195 IPR000157 GO:0007165
Seca12g06925 1007 Gene3D - 313 391 IPR042197 -
Seca12g06925 1007 SMART till_3 19 159 IPR000157 GO:0007165
Seca12g06925 1007 SUPERFAMILY L domain-like 445 924 - -
Seca12g06925 1007 Gene3D - 17 192 IPR035897 -
Seca12g06925 1007 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Seca12g06925 1007 Gene3D Ribonuclease Inhibitor 663 809 IPR032675 -
Seca12g06925 1007 Gene3D Ribonuclease Inhibitor 485 642 IPR032675 -
Seca12g06925 1007 Pfam Leucine Rich Repeat 569 587 IPR011713 -
Seca12g06925 1007 Gene3D Ribonuclease Inhibitor 810 923 IPR032675 -
Seca12g06925 1007 Pfam NB-ARC domain 202 307 IPR002182 GO:0043531
Seca12g06925 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 401 IPR027417 -
Seca12g06925 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 756 IPR044974 GO:0006952
Seca12g06925 1007 PRINTS Disease resistance protein signature 901 917 - -
Seca12g06925 1007 PRINTS Disease resistance protein signature 220 235 - -
Seca12g06925 1007 PRINTS Disease resistance protein signature 289 303 - -
Seca12g06925 1007 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Seca12g06925 1007 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 162 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06925 Seca-Chr12 161225424 161232535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06925 735 916 WRKY Transcription Factor Family AT4G12020 37.363 2.89e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06925 - - ccaj:109803335 1127.08