Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06923 ATGCAGGAAAGAAACTTGGTTTCAATGTTGGGGAGTTCTTCTTCTACGACTACTGTAACTCCAAAGCATGATGTGTTCCTCAGCTTTCGAGGGGAAGACACCCGTGACAACTTCACTAGCTATCTTTATGCAGAGCTACGCAGGAAAAATATTGAAACATTCATAGATTACAGGCTAGACAAAGGGGAAGAGATTTCACCAGCACTCTACAAAGCAATAGAAGAATCCATGATTTATGTCATCATTTTCTCCGAAGACTATGCTTCTTCCACATGGTGCTTGGCTGAACTCACAAAAATACTCGAATGCAAAAATAGATATGGAAGGGATGTGGTACCAGTTTTCTATAAGGTGGATCCATCAACTGTTAGGCATCAGAGAGGGAGTTATGCAGAGGCATTTGTTAAGCATCAACGGCGATTTAAGGACGACATGGACAAACTCCGCACGTGGAAGGCTGCTCTAACCGAAGCTGCTCAACTCTCGGGCTGGGATTCACAAGTAACCAGACCAGAACCAACACTTGTTGCAGATATTGTGAAAGACATTTTGAGAAAATTGAATCATTCTTTTTTAAATGATTATCAAGGAATAATTGGAATAGACAAGCATATGGCAAAAATCGAGTCCTTGTTGCACCTTGGGTCAGAGGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGAAAAACAACTATTGCTAATGCAGTATATCACAAACTGGCAACTCAATTTAATTCCAGCAGCCTTGTTTTAAATGTTGAGGAAAAGATAGAAAGAAAAGGAGCTTACTATGTACAAAATAAATATTTGTCAGAGCTCCTAGGGGAAGATAACAGGTTACATGATCAAAGGCTCAAACGGGCAAAAGTTCTCCTTGTCCTTGATAATGTCAACAATTCTGGTGAACTTCCATTAAGGCATGATGACTTCGGCCAGGGAAGCAGAATCATCATAACCAGTAGAGACATGCAAGTGCTTAAGAATGCCAATGCTGATGAAATATATGAAGTCAAGGAGATGAATTTTCAAGATTCTCTACGACTCTTCAGTTTAAATGCCTTTAAACAAAACTGTCCTTTAGAAACTTATATGGACTTATCAGTAAAGGTGTTAAATTATGCTAAAGGGGTTCCGTTGGCTATCACAGTTTTGGGCTCATTGCTTTATGGTAGAACAAAGGAAGCTTGGCGAAGTGAGTTGCAAAAGCTGGAAAAGCTTCCCGATAGTGAAATTTTCAGTGTGTTGAAATTAAGCTATGATCGGCTTGATGAGGAGCAAAAGGATATATTTCTTGACATAGCTTGCTTCTATAGAGGACATTTGGTGAATAATGTAGCAGAGACACTAGATGGTTGTGGTTTCTCCGCTGACATAGGAATGGATGTTCTCAAAGATAGGTGCCTTATATCAATTTCAGAAGGTAGGATTATGATGCATGATCTAATACAGGAAATGGGAGAAGAAATTGTTCGTCAAGAATGTGTCAGAGATCCAGGAAAACGCAGTCGATTATGGAAGCATGAGGAAATTTATCATGTATTAAGAAAGAACAAGGGGAAGAGGACAGATGCAATCCAGTGTATATTCCTCGACATATGCAAAATAAAGAAAGTTAAACTACATGCTAAAACTTTCAAAAACATGGATAATCTGAGAATGCTCCACTTCTATAATTCTAGTGTATTTAATAATGACACAAGTAATGTGATCCTTCCTGCACTTCTTCAAAGTCTTCCGGATGATTTAAAATTTCTTCGTTGGGATGGCTTCTCTCATAGATCTTTGCCACTGGACTTTAGGCCAGAAAGTCTTGTTACACTTGATATGCCTCATAGCCATCTCACTCACCTGTGGGAGGGGGATCAGGATTTACCGAATTTGAAAAGGCTCGATCTTAGTTATTCTCGGGAGCTAATTCGAATACCAGACCTCTCTGTGTCCCCAAATATTAAAGAAATAATTCTCAGTCATTGTGTTAGCTTGGTTCAAGTTTATTCCTCAAGTTTCCTCAGCAAGCTCAATTGTTTATGTTTAAATGGTTGTGTTGAGCTTAGGAGTTTAAATCTTCCTAGCAACATTCTATCGGGGTCTTCTGGATTAGTTCTTCTCTATAATTGTTGCAAGCTTGAAACGTTTTCAATCAGTAGTACAACCGAGGTGGTTCAATCACACGGTCGCTGGCGCTATGATGGATTTTGGGGAGCAATAGAAATTTATGATGATGCAAAATTTGGTCCCACACAGGGGGTTTGTAGAGTTTTCAATGAGAAGATTTGTAGAGTTTTCGATGAGCGATTTTCTTTAGACCCCATTGCTAATACTGACAGTGACAGATATGAAAAGGAAGAATTGGTGGATGGTACACACTTACTGAAAATTGAAATGGTGAGAGAAACTACGCCCTCATCATTTCCAAGTCTCAATGGGTATTGTTGGTTAGATCTCTGTAATTGTGAATCCCTCACAAGCCTTCCAATTGAGCTTTGTAAGTTGAAATTTGTAAAAAGACTTTATCTCGACGGTTGCTCAAATTTGGAAATTTTCCCTAAAGTTGAGGCCCCAATGGAAAATTTAACAGTGCTCACATTAGACAAAACAGCAATAAAGGAGCTACCTTCATCTTTGCACCATTTGGTCGGGCTTGAAGAATTGAGCTTGAAAATGTGCCAAAGGCTTGAGATTATTCCATCTTCCATTGGGGGTCTCAGCAAACTCTGCAAGTTAGATCTTACCTATTGTGAGTCACTTGAAACTTTTCCTAGTACTATTTTCAAATTGAAGTTGACAAAACTCGATTTGCATGGTTGCTCAATGCTAAAGACCTTCCCAGAGATCTTAGAGCCTGCAGAAAGTTTTGCCTATGTTAACTTAACAAAAACAGCAATTGAAGAGCTTCCTTCATCATTGGACTATTTGGTTGGGCTTCAAACCTTGCGTCTGAACTTGTGCAGAGAACTCGAGTCCCTTCCAAACAGCATTGTTAATCTAAGCCTTCTCTCCGAGCTTGATTGTTCGGGCTGTGTCAAATTAAGAGAAATCCCAAAGGATATTGGTCGCTTGTCATTATTAAGGGAACTGTCACTGCAAGAAAGCAGTATTGTGAACCTTCCCGAGAGTATAGCTCATCTTTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAGGCTTGAATGTATCCCACAACTTCCACCATTTCTGAAGCAGTTATCGGCATTTGATTGCCCATCCATTACAAGTGTGATGTTATATTCAGATTCAGATCAGGCTAGATCACTACCGTCAGAGGATACCTTCAAATTTCATTTCACCAATAATGAAGAACAGGATGCAAGTGTTCATAGTAATATTGTAGCCAATGCACAGCTTAGGATCACTGGGGATGCATATAGGTTTGTGTTCTATTGCTTTCCAGGGAGTGCAGTTCCTCATTGGTTACCTTTTCGCAGCGAGGGACATTCAGTAACTGTCAATAGAGATTCTCTAAATTGGTGTTGGTGTGATGATAATAGCAGGCTCATTGGGTTCGCTCTATGTGTCGTTTTGGGTACAGATGTTATACATGACCATCGGGGTTATTTCAGATACAGATTAACATTCCAATTTGATGGTCGCACACACGTTCTTTCCAACCATGATGGGCCAACATACAATTTCGTTTGGAAGGATCGAATGAGAAGTGTTGTTAAAGATCACATAATTGTATGGAAACATCATCTCGACTCTGCAAGCATGGAGAACAAGCTCTTTCATGCCCATGGAATCACTTTTGAGATCATCACTCCGAGGTCAATTTTTAAGAACACTACCAGGGTGAAAGAGTGCGGAATATGCCCTCTTTTTACCAAACAAAACAATGATGATACTGGTATAAAGAGGCCACGTCTAAGGTGA 3903 0.3971 MQERNLVSMLGSSSSTTTVTPKHDVFLSFRGEDTRDNFTSYLYAELRRKNIETFIDYRLDKGEEISPALYKAIEESMIYVIIFSEDYASSTWCLAELTKILECKNRYGRDVVPVFYKVDPSTVRHQRGSYAEAFVKHQRRFKDDMDKLRTWKAALTEAAQLSGWDSQVTRPEPTLVADIVKDILRKLNHSFLNDYQGIIGIDKHMAKIESLLHLGSEAVRIIGIWGMGGIGKTTIANAVYHKLATQFNSSSLVLNVEEKIERKGAYYVQNKYLSELLGEDNRLHDQRLKRAKVLLVLDNVNNSGELPLRHDDFGQGSRIIITSRDMQVLKNANADEIYEVKEMNFQDSLRLFSLNAFKQNCPLETYMDLSVKVLNYAKGVPLAITVLGSLLYGRTKEAWRSELQKLEKLPDSEIFSVLKLSYDRLDEEQKDIFLDIACFYRGHLVNNVAETLDGCGFSADIGMDVLKDRCLISISEGRIMMHDLIQEMGEEIVRQECVRDPGKRSRLWKHEEIYHVLRKNKGKRTDAIQCIFLDICKIKKVKLHAKTFKNMDNLRMLHFYNSSVFNNDTSNVILPALLQSLPDDLKFLRWDGFSHRSLPLDFRPESLVTLDMPHSHLTHLWEGDQDLPNLKRLDLSYSRELIRIPDLSVSPNIKEIILSHCVSLVQVYSSSFLSKLNCLCLNGCVELRSLNLPSNILSGSSGLVLLYNCCKLETFSISSTTEVVQSHGRWRYDGFWGAIEIYDDAKFGPTQGVCRVFNEKICRVFDERFSLDPIANTDSDRYEKEELVDGTHLLKIEMVRETTPSSFPSLNGYCWLDLCNCESLTSLPIELCKLKFVKRLYLDGCSNLEIFPKVEAPMENLTVLTLDKTAIKELPSSLHHLVGLEELSLKMCQRLEIIPSSIGGLSKLCKLDLTYCESLETFPSTIFKLKLTKLDLHGCSMLKTFPEILEPAESFAYVNLTKTAIEELPSSLDYLVGLQTLRLNLCRELESLPNSIVNLSLLSELDCSGCVKLREIPKDIGRLSLLRELSLQESSIVNLPESIAHLSSLKSLDLSDCKRLECIPQLPPFLKQLSAFDCPSITSVMLYSDSDQARSLPSEDTFKFHFTNNEEQDASVHSNIVANAQLRITGDAYRFVFYCFPGSAVPHWLPFRSEGHSVTVNRDSLNWCWCDDNSRLIGFALCVVLGTDVIHDHRGYFRYRLTFQFDGRTHVLSNHDGPTYNFVWKDRMRSVVKDHIIVWKHHLDSASMENKLFHAHGITFEIITPRSIFKNTTRVKECGICPLFTKQNNDDTGIKRPRLR. 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06923 1300 Gene3D Ribonuclease Inhibitor 523 723 IPR032675 -
Seca12g06923 1300 Gene3D Ribonuclease Inhibitor 794 930 IPR032675 -
Seca12g06923 1300 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 164 IPR035897 -
Seca12g06923 1300 Pfam TIR domain 22 193 IPR000157 GO:0007165
Seca12g06923 1300 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 939 IPR044974 GO:0006952
Seca12g06923 1300 SUPERFAMILY "Winged helix" DNA-binding domain 412 517 IPR036390 -
Seca12g06923 1300 Pfam Leucine Rich Repeat 607 625 IPR011713 -
Seca12g06923 1300 SUPERFAMILY L domain-like 481 719 - -
Seca12g06923 1300 PRINTS Disease resistance protein signature 221 236 - -
Seca12g06923 1300 PRINTS Disease resistance protein signature 625 641 - -
Seca12g06923 1300 PRINTS Disease resistance protein signature 377 391 - -
Seca12g06923 1300 PRINTS Disease resistance protein signature 287 301 - -
Seca12g06923 1300 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Seca12g06923 1300 Pfam NB-ARC domain 203 410 IPR002182 GO:0043531
Seca12g06923 1300 Gene3D Ribonuclease Inhibitor 931 1098 IPR032675 -
Seca12g06923 1300 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Seca12g06923 1300 Gene3D - 342 426 IPR042197 -
Seca12g06923 1300 SMART till_3 22 161 IPR000157 GO:0007165
Seca12g06923 1300 Gene3D - 186 340 IPR027417 -
Seca12g06923 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 436 IPR027417 -
Seca12g06923 1300 Gene3D - 20 185 IPR035897 -
Seca12g06923 1300 Pfam C-JID domain 1140 1286 IPR045344 -
Seca12g06923 1300 SUPERFAMILY RNI-like 802 1102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06923 Seca-Chr12 161177698 161187274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06923 815 981 WRKY Transcription Factor Family AT4G12020 32.934 8.19e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06923 - - ccaj:109803335 1456.81