Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06921 ATGGTGAAATCGAGCAACAATGGTTCTGGTTCTGGTTCTGGTTCAGTGCCTCCTTTCCTGAACAAGTGTTACGACATGGTGGAAGACCAATCCACCGACTCCATCATCTCTTGGACCCAAGGCGGTGACAGTTTTCTCATCTCCGATGTCACTCAATTCTCCATCACACTTCTCCCTAACTATTTCAAACACAACAATTTCTCCAGCTTCATCAGGCAACTCAATATCTATGTTGAAGTGAGTCTCTTTCAAAAGTCAGTGATTGATAACTGTAGAATCTATCAGGGTTTCAGGAAAATTGATACAGATAGCTGGGAATTTTCCAATGAGAACTTTGTTAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACATGTTGCAGATCAGCAAAAAGCATTGCCGCAACAAGACAATTGTGAGGAACCTTCAGAAGAAGCACCAAATCATGGCCTTTGGAAAGAAGTTGAGAATCTTAAATCCGATAAAAATTCCCTCATGCAGGAGCTGGTCAAACTTGGGCAACACCTGGAATCTGCTGAGAATAAGTTGCTGCTTCTGAGTGACCGCCTTCAAGGAATGGAGAAGCATCAACAGCAGATGTTGTCATTCTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGTTGCTTCAACCAAAGGATAATAACTGGCGTTTGGCTGAAACAGGGAATATGCTGGACCAAGGTAAACAAGATGACAAACCAGTTACTTCGGATGGGATGATTATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGGTCCACTATCTCCTGGTTTCAATAAGCAGCAACCAGAACCTGAGCTTTCTGTAGATGGGTTAAAAGACTTGTGCATCAGTTCTGATTTCCTGAAAGTCCTTCTGGATGAAAAAATGTGTCCGCTAGATAATCATTCTCCATTTCTTCTACCAGATTTACCTGATGACGGTTCATGGGAACAGCTTTTTGTAGGTAGTCCTTTCCTCGGAAACATTGAAGATACTGATCATGAAAATGAGGGGTCCGCTGTTAATGGAATGGAGGTGGAACCTGCTATATCTGAAACTCCAAATGAAAACTCTCTGACATTTGAATCAATGATTGTAGAAATGGAAAAAACTCAAGTGTGA 1158 0.4162 MVKSSNNGSGSGSGSVPPFLNKCYDMVEDQSTDSIISWTQGGDSFLISDVTQFSITLLPNYFKHNNFSSFIRQLNIYVEVSLFQKSVIDNCRIYQGFRKIDTDSWEFSNENFVRGQKHLLKNIRRRKHPHVADQQKALPQQDNCEEPSEEAPNHGLWKEVENLKSDKNSLMQELVKLGQHLESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPKDNNWRLAETGNMLDQGKQDDKPVTSDGMIIKYKPPVGEKLKPVGPLSPGFNKQQPEPELSVDGLKDLCISSDFLKVLLDEKMCPLDNHSPFLLPDLPDDGSWEQLFVGSPFLGNIEDTDHENEGSAVNGMEVEPAISETPNENSLTFESMIVEMEKTQV. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06921 385 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g06921 385 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g06921 385 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g06921 385 Coils Coil 160 201 - -
Seca12g06921 385 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 241 IPR027725 -
Seca12g06921 385 SUPERFAMILY "Winged helix" DNA-binding domain 15 126 IPR036390 -
Seca12g06921 385 Gene3D - 12 127 IPR036388 -
Seca12g06921 385 MobiDBLite consensus disorder prediction 130 153 - -
Seca12g06921 385 Pfam HSF-type DNA-binding 19 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g06921 385 SMART hsfneu3 15 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g06921 385 FunFam Heat stress transcription factor B-4 11 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06921 Seca-Chr12 161158130 161160217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06921 1 336 HSF AT1G67970 46.471 1.15e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca12g06921 HSF_DNA-bind 2.2e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06921 K09419 - gmx:100813694 612.453