Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06914 ATGGCCAATTTACAAATCACCACCGAGAATGTGGTTCCTGATCAATTCCCGGCTGGTCTCAGCGTTCTTGCGGTTGATAATGACAACACTATTTTTAAACTCATTGAACAATTATGTATTCGATTCAATTATCAATTTACCACATGCTCTGAGGCTCAAGTTGCCATGAATCTTTTGAGGGATAGAAAGGGTTCTTTTGATGTGATACTAATTGATGTTCACATGCCAGACATGGATGCCTATGAATTCCTTCAGTATGTTACCCAAGAATTGAATCTTCCTGTTATTATGATGTCTGTTGATGCATCAGCAAGTGATGTCATGAAGGCAATTAGATATGGAGCTTGTGATTATTGGATTAAGCCTTTGCAGGAGCAACAGTTCAAGTATATGTGGCAGCATTATGTAAGGAATGCCTTGAAACAAAATAATCAAGAACAAAAATTTAGCAACTTAGAAGATGATGCAACTGAAGCAATTTTTAATTCCCCAAAAGAGAGCACTTCAAGAGAAGCTGATGCTGATGAATCAGATAATCTTTATCAACCCGCAACAAAGAAGGCCCGTATAGTATGGACAAAAGAACTGCATCAACAATTTGTCAGGGCTGTGATGCAACTGGGGCTTGATAAGGCTGTGCCAAAGAAAATTCTTGAAGTGATGAATGTTCCTGGTTTGACAAGAGAGAATGTTGCTAGTCACTTGCAGAAATTTAGACTTTACATGAGGAAAGCTGTCCCTGAGAGTATAAAACCCAAGTTTGGTGCATATGGAGGATTTGACTTTAAAGCACTGGCTGGCCTCAATGACAACTTAATTTCAAAAGAAGACCAAAGTGCCCTATTGATGTCATCCTTGGAGTGGCCCCCAAACTCTTCCCATGCTATGAACATTGCCAAGAATTTTCCTCCATCAAGATATGGAACATGGCCTCCATCTAATGCAATTGATTCAGTTGGAGTCAACAATAATAATGATAATGTGCTGATGAATACATTATTAATGCAGCAACAGCAACAGCAATGGCAGGAATCAGCGATGAAACAGGATCAAATTCAATCAATGAATGTTCAACCATCATACACCACAGCTAGAGGCATTTTCTTAGGGAATGCTCCTCCTCCAACCTCCATTTCTCATCCAATATTCTCTTGTTCAATAACTCCACAGCTTCCAAACTCAACTTTCACAATTGCTTTGAGATCTTCTCCTGTGTCTCATACACAAGTTCCCTATGGTGATTCACCATCCATCCCAAGTGGGTCTGCTGAACTTGAAATGGAATCATCTTTGATTGGAAAATTGTCCACGGATAAGGAGGAGCTAAAATCTATTAGTCCACAAGAGGATCATGACCCACTCTCATGA 1368 0.3962 MANLQITTENVVPDQFPAGLSVLAVDNDNTIFKLIEQLCIRFNYQFTTCSEAQVAMNLLRDRKGSFDVILIDVHMPDMDAYEFLQYVTQELNLPVIMMSVDASASDVMKAIRYGACDYWIKPLQEQQFKYMWQHYVRNALKQNNQEQKFSNLEDDATEAIFNSPKESTSREADADESDNLYQPATKKARIVWTKELHQQFVRAVMQLGLDKAVPKKILEVMNVPGLTRENVASHLQKFRLYMRKAVPESIKPKFGAYGGFDFKALAGLNDNLISKEDQSALLMSSLEWPPNSSHAMNIAKNFPPSRYGTWPPSNAIDSVGVNNNNDNVLMNTLLMQQQQQQWQESAMKQDQIQSMNVQPSYTTARGIFLGNAPPPTSISHPIFSCSITPQLPNSTFTIALRSSPVSHTQVPYGDSPSIPSGSAELEMESSLIGKLSTDKEELKSISPQEDHDPLS. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06914 455 SUPERFAMILY CheY-like 19 153 IPR011006 -
Seca12g06914 455 NCBIfam myb-like DNA-binding domain, SHAQKYF class 187 240 IPR006447 GO:0003677
Seca12g06914 455 Gene3D - 184 245 - -
Seca12g06914 455 MobiDBLite consensus disorder prediction 433 455 - -
Seca12g06914 455 Pfam Myb-like DNA-binding domain 192 237 IPR001005 -
Seca12g06914 455 FunFam Two-component response regulator 183 245 - -
Seca12g06914 455 Gene3D - 20 155 - -
Seca12g06914 455 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 334 IPR045279 GO:0009736
Seca12g06914 455 MobiDBLite consensus disorder prediction 406 455 - -
Seca12g06914 455 SUPERFAMILY Homeodomain-like 185 244 IPR009057 -
Seca12g06914 455 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Seca12g06914 455 CDD REC_typeB_ARR-like 22 134 - -
Seca12g06914 455 SMART REC_2 20 132 IPR001789 GO:0000160
Seca12g06914 455 Pfam Response regulator receiver domain 22 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06914 Seca-Chr12 161090520 161092889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06914 14 244 Response Regulator Gene Family AT2G25180 46.281 4.01e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca12g06914 Response_reg 4.3e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06914 - K14491 aprc:113871558 327.02