Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06910 ATGCTCACAAGAACAAAATTCCTCAACTTGATCTCAACTCTCAGAGTTTCTCAACTAATTTCTCACCAAATCAATGCAGTTCCACACCCATCACACCTTTCTTCTGAAATTCCGAAAACGGTTAGGGTTTTACTACTATTCTATGGAACGCAAGCCTCCAAACCCCCAGAATACGAGATGCCTTCTGTGACATGGGGTGTCATTCAAGGTCGCAAAGAGAAGCTCGTTTCGCGTGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCTGATGAGTTGCAGGACTTGGAGCTTCCTTCCACCGTTGAGGTCATGAGGGAGCGCGTCGAGTTTCTTCAAAAATTAGGTTTGACCGTTGACGACATGAACGAGTACCCTTTGATGCTGGGATGCAGTGTGAGAAAGAACATGATTCCTGTGTTGGGGTACTTGGAAAAAATTGGGATTCCAAGGTCCAAGCTTGGCGAGTTTGTTAAGAATTACCCACAAGTTTTGCATGCTAGTGTCATTGTTGAGCTTGCCCCTGTTGTCAAGTTCCTTAGAGGTCTTGATGTGGAGAAAGGGGATATTGGGTATGTGCTGCAAAAGTATCCTGAACTTCTTGGGTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTCAATCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATTTATTGGGGATGAGAGTTGGGACTGTGATAAAGCCTCTGATTGATTACTTGCACACTTTGGGGCTGCCAAAGAAGATTTTAGCTAGGATGTTGGAGAAAAGAGCCTATATACTTGGGTATGATCTTGAAGAGACTGTGAAACCAAATGTGGATTGTTTGATCAGTTTTGGTATAAGGAAGGAGTGTTTGCCTTCGGTTATTGCTCAATATCCCCAGATCCTTGGGCTACCTCTTAAGGCTAAATTATCTTCACAGCAATACTTTTTCAGTTTGAAGCTTAAGATTGACCCTGAAGGGTTTGCACGAGTGGTGGAGAAGATGCCACAAGTGGTTAGCCTTCACCAAAATGTGATTATGAAGCCAGTTGAGTTCCTTCTTGGTAGGACAATACCATCACAAGATGTGGCTTCTATGGTGATAAAGTGTCCTCAGTTAGTTGCACTGCGAGTTGAGTTCATGAAGAACAGTTACTTCTTCTTCAAGAGTGAGATGGGGAGACCCATGAAAGAGCTTGTGGAGTTCCCAGAATACTTTACTTATAGTTTGGAATCCAGGATCAAACCCAGATACCAGCGGCTAAAGAACAAGGGGATAAGGTGTTCATTGAATTGGATGCTAAATTGTAGTGACCAGAGATTTGAAGAGAGATTACAGGGTAATTACATTGAAACTGAAAGTATAGGTCCATCATTCTGTATGGGTGGGAAATTAGAACTACCAGGGAATGCTATAATGTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGACGAACTGTTTCTCTTTAG 1506 0.4263 MLTRTKFLNLISTLRVSQLISHQINAVPHPSHLSSEIPKTVRVLLLFYGTQASKPPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFLQKLGLTVDDMNEYPLMLGCSVRKNMIPVLGYLEKIGIPRSKLGEFVKNYPQVLHASVIVELAPVVKFLRGLDVEKGDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPLIDYLHTLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLISFGIRKECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRTIPSQDVASMVIKCPQLVALRVEFMKNSYFFFKSEMGRPMKELVEFPEYFTYSLESRIKPRYQRLKNKGIRCSLNWMLNCSDQRFEERLQGNYIETESIGPSFCMGGKLELPGNAIMSDEEEESDDEMLYRRTVSL. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06910 501 Gene3D Transcription termination factor 3, mitochondrial 247 461 IPR038538 -
Seca12g06910 501 Gene3D Transcription termination factor 3, mitochondrial 108 246 IPR038538 -
Seca12g06910 501 PANTHER CGI-12 PROTEIN-RELATED 142 455 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 FunFam Transcription termination factor mterf4, chloroplastic 107 244 - -
Seca12g06910 501 Pfam mTERF 143 451 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 FunFam Transcription termination factor MTERF4, chloroplastic 245 459 - -
Seca12g06910 501 SMART mt_12 338 368 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 193 224 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 301 333 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 229 260 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 121 152 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 157 188 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 405 436 IPR003690 GO:0003690|GO:0006355
Seca12g06910 501 SMART mt_12 373 404 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06910 Seca-Chr12 161063620 161065125 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca12g06910 mTERF 8.5e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06910 K15032 - gmx:100809590 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06910 12 161063620 161065125 Seca10g04828 10 111099093 111101118 PCT