Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06908 ATGGTCCCCGCCCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTCTTGCAATTTGCAGGAATTGAGGACGTCTTCACCTCCTCCAGAAGATCCACTAAGACTCTTGGAAATTTCGTCAAGGCTACTTTTGATTGTCTGCTGAAAACCTACGGGTTCCTAACGCCCGACTTCTGGAGGGAGACTCGTTTCTCCAAATCTCCATTCCAAGAGTACACTGATCTATTGGCTAAGCCAACAGGAAAGGCCTCGATCCTTGAGGAGGAGAGGGTGGATGCTTGA 291 0.4948 MVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRRSTKTLGNFVKATFDCLLKTYGFLTPDFWRETRFSKSPFQEYTDLLAKPTGKASILEEERVDA. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06908 96 Pfam Ribosomal protein S5, C-terminal domain 1 63 IPR005324 GO:0003735|GO:0005840|GO:0006412
Seca12g06908 96 Gene3D - 1 64 IPR014721 -
Seca12g06908 96 SUPERFAMILY Ribosomal protein S5 domain 2-like 1 64 IPR020568 -
Seca12g06908 96 FunFam 40S ribosomal protein S2 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06908 Seca-Chr12 161042004 161042829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06908 1 84 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 86.905 3.24e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06908 K02981 - gmx:100797105 184.111