Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06886 ATGGTGAAGGAGAAAGGGATGGAATCTCTGACCCAGTTTGGAGGCGTAAAAGAAGTTGCTGCACTTCTTCAAACTGATACAAAGCATGGCATCACAAATAGATCCATTGATCTTAATCAGAGAAAGGATGTATTCGGCGTCAACATGTTCCAGAGACAGCCCCCTATGAGATTTCTTCCTTTCCTACTCAAAGCATTCAAAGACAAACTGATTGTTCTAAATCTGATATGTGCTGTGCTCTCTATGGGTTTTGGCATCAAGCAAAATGGCTGGAAAGATGGATGGTATGCTGGTGGTGGAAGCAGTGTTTTGGCTATTGTTTTTGCTGTTTTCATCTCTGCTTTGTGCAACTTTAAGCTACATAGACAGTTTGAGGAGCTTTCCACAAAGGGCGGTGACATAAAGGTGGAAGTTGTTAGAGATGGTCGACGTCAAATCATATCAACCTGTGATGTGGTGGTTGGCGACATCGTCTTCTTGAACACCGGTGACCAAGTTCCAGCAGATGGGTTGTTCTTGCAAGGACATTCCTTAAAGGTGGATGAGTCCAGTGTGACAGGTGAAAGTGACCATGTCCATGTAAATGCTAACATAAACCCTTTTTTGCTCTGTGGAACAAAGGTGACAAATGGTTTTGCTCACATGCTTGTTACCTCTGTGGGTATGAACACTGCTTGGGGTGAGATGATAAGCTTGGTAACCATAGACCCAGATGTGCAAACACCTCTACAAGCACGTCTCAACAAGTTGACATCTGATATAGGGAAAGCTGCAGTGTGGGCAGCCACTCTTGTTCTGTTGGTTTCAATAACTCGGTATTTCACCAGAGAATTCCACGGAAGCAAGACCAAGTTTGAGGATGTAATGAATGCAATAATCGGAATCATTGGTGATGCAATCACAACTGTGGAGGTGGCAATCCCAGAAGGTTTGCCTTTGGCTGTTACTCTCACTCTGGCTTTTTCCATGAAGAAAATGATAAGAGATAATGGCTTGATTCGAGAACTCTCTGCTTGTGAGAGAATAGTATCAGTAACAACAATCTGCACTGATAAAACAGGAACCCTTACATTAAACGAGATGAAGGTCACAGAGGTTTGGGTGGGGGAACAAACAATAGTAGAAGCAAGGGAGCATCTGCCCCAAAATATATTCCAATTACTGAAAGAAGGAATTGGTTTGAATACCACTGGAAGCATTTACCAACCCCAATCCAATCCACTTCCTGAAACATCTGGCAGTCCAACAGAGAAAGCACTTCTTTCCTGGGGTGTGTTAGATCTGGGCATAAATATTGATGAATTGAAGCAGAATTTCAAAATAATTCATATGGAGACCTTCAATTCGGAGAAGAAGAGAAGTGGGGTTTTGACAAGGGAGAACAGAGGAGACAGGATTCATTCACACTGGAAGGGTGCTGCTGAGGTAATATTGACAATGTGTTCAAACTATTATGATCAAAGAGGAGAAATCATGATCATGGATGCTGAAAAAAGAGTTCAAATTGAGGACATTATCAAGGGTATGGCAGCTAAAAGCCTGCGATGCATCGGCTTGGCCCAAAAGAGCTGCACAGAAAATAACGATGGTGAGGTGTATCAAAAGGTTGAAGAGACAGAACTGGTATTGTTAGCGATACTTGGATTAGAGGATCCTTGTAGGCCAGGAGTTAGAGAAGTGGTTGAATCCTGCAGAAACGCTGGAGTGGAGATCAAGATGATCACAGGAGATAATGTGCATACTGCAAGGGCCATAGCCTCTGAAAGTGGGATTCTCAGTCCTTTGGAGGCATTGGATGAAGAAGCAGTGGTGGAAGGTTATCAGTTCAGAAATTACACACATGAAGAAAGAATGGAGAGGATTGACAAAATCAGAGTCATGGCCAGATCCTCTCCAGATGACAAGCTTATGATGGTTCAATGTTTAAAGCAGAGGGGTCACGTGGTAGCAGTCACAGGTGATGGCACAAATGATGTACCTGCTCTAAAAGAGGCAGATATTGGTCTTTCCATGGGGATACAAGGAACTGAAGTGGCAAAACAGAGCTCAGATATTGTCATCCTGGATGACAATTTCCATTCTGTGGTAACAGTACTGCGGTGGGGAAGGTGTGTACATGCCAACATTCAAAAGTTCATTCAGTTCCAATTGACACTTAATTTTGTTGCAGTTGTCATGAACTTTGTAGCTGCAGTTTCTTCTGGTAAAGTACCACTTACAAATGTCCAACTATTGTGGATAAACCTTATAACATATGCTCTCGGGGGTTTAGCCTTGGCCACTGAGCAACCCACTGATGATCTCATGGAGATGCCACCTGTGGGTCGATTGGAGCCACTTATAACTAAAGTTATGTGGCGAAACCTCATTGCACAAGCATTGTATCAAGTGACTGTGGTTTTGATTTTGCAATTCAAGGGAAAATCAATGCTTCATGCAAATGAAGAGGGGAAGGATACCTTTATTTTTAATGTTGTTGTCTTGTGCCAAGTTTTTAATTGCTTCAATGCAGGGAAGCTTGAGAAGAAAAACATCTTTGAGGGACTTGCCAATAATAGGTTGTTCATGGTAATTGTGGGCCTAACTGTTGCTTTTCAGCTAGTGATGGTTGAGTTTCTGCATAAGTACGCCAATACTGAGAGATTGAATTGGGAGCAGTGGGGTGTTTGCATTGGCATTGCAGCTTTGTCCTGGCCAATTGATCTTCTTGTGAAGAGTATCCCAGTTGTTCTTGACAACTGCCAAGCCATAATATAA 2757 0.4266 MVKEKGMESLTQFGGVKEVAALLQTDTKHGITNRSIDLNQRKDVFGVNMFQRQPPMRFLPFLLKAFKDKLIVLNLICAVLSMGFGIKQNGWKDGWYAGGGSSVLAIVFAVFISALCNFKLHRQFEELSTKGGDIKVEVVRDGRRQIISTCDVVVGDIVFLNTGDQVPADGLFLQGHSLKVDESSVTGESDHVHVNANINPFLLCGTKVTNGFAHMLVTSVGMNTAWGEMISLVTIDPDVQTPLQARLNKLTSDIGKAAVWAATLVLLVSITRYFTREFHGSKTKFEDVMNAIIGIIGDAITTVEVAIPEGLPLAVTLTLAFSMKKMIRDNGLIRELSACERIVSVTTICTDKTGTLTLNEMKVTEVWVGEQTIVEAREHLPQNIFQLLKEGIGLNTTGSIYQPQSNPLPETSGSPTEKALLSWGVLDLGINIDELKQNFKIIHMETFNSEKKRSGVLTRENRGDRIHSHWKGAAEVILTMCSNYYDQRGEIMIMDAEKRVQIEDIIKGMAAKSLRCIGLAQKSCTENNDGEVYQKVEETELVLLAILGLEDPCRPGVREVVESCRNAGVEIKMITGDNVHTARAIASESGILSPLEALDEEAVVEGYQFRNYTHEERMERIDKIRVMARSSPDDKLMMVQCLKQRGHVVAVTGDGTNDVPALKEADIGLSMGIQGTEVAKQSSDIVILDDNFHSVVTVLRWGRCVHANIQKFIQFQLTLNFVAVVMNFVAAVSSGKVPLTNVQLLWINLITYALGGLALATEQPTDDLMEMPPVGRLEPLITKVMWRNLIAQALYQVTVVLILQFKGKSMLHANEEGKDTFIFNVVVLCQVFNCFNAGKLEKKNIFEGLANNRLFMVIVGLTVAFQLVMVEFLHKYANTERLNWEQWGVCIGIAALSWPIDLLVKSIPVVLDNCQAII. 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06886 918 Gene3D - 38 234 - -
Seca12g06886 918 ProSitePatterns E1-E2 ATPases phosphorylation site. 351 357 IPR018303 -
Seca12g06886 918 FunFam Calcium-transporting ATPase 547 697 - -
Seca12g06886 918 SFLD p-type atpase 332 705 IPR044492 -
Seca12g06886 918 Pfam Cation transporter/ATPase, N-terminus 14 81 IPR004014 -
Seca12g06886 918 PRINTS H+-transporting ATPase (proton pump) signature 502 520 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g06886 918 PRINTS H+-transporting ATPase (proton pump) signature 684 709 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g06886 918 PRINTS H+-transporting ATPase (proton pump) signature 652 668 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g06886 918 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 909 IPR023298 -
Seca12g06886 918 SUPERFAMILY HAD-like 347 755 IPR036412 -
Seca12g06886 918 Gene3D - 359 552 IPR023299 GO:0000166
Seca12g06886 918 NCBIfam HAD-IC family P-type ATPase 623 732 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g06886 918 NCBIfam HAD-IC family P-type ATPase 103 373 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g06886 918 SFLD Haloacid Dehalogenase 332 705 - -
Seca12g06886 918 FunFam Calcium-transporting ATPase 669 911 - -
Seca12g06886 918 Pfam Cation transporting ATPase, C-terminus 737 906 IPR006068 -
Seca12g06886 918 Gene3D - 346 697 IPR023214 -
Seca12g06886 918 FunFam Calcium-transporting ATPase 359 552 - -
Seca12g06886 918 Gene3D - 64 906 - -
Seca12g06886 918 NCBIfam calcium-translocating P-type ATPase, PMCA-type 8 909 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca12g06886 918 FunFam Calcium-transporting ATPase 112 234 - -
Seca12g06886 918 PANTHER CATION TRANSPORTING ATPASE 2 909 - -
Seca12g06886 918 Pfam E1-E2 ATPase 135 328 - -
Seca12g06886 918 Pfam haloacid dehalogenase-like hydrolase 345 666 - -
Seca12g06886 918 PRINTS P-type cation-transporting ATPase superfamily signature 676 688 - -
Seca12g06886 918 PRINTS P-type cation-transporting ATPase superfamily signature 652 671 - -
Seca12g06886 918 PRINTS P-type cation-transporting ATPase superfamily signature 349 363 - -
Seca12g06886 918 PRINTS P-type cation-transporting ATPase superfamily signature 567 577 - -
Seca12g06886 918 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Seca12g06886 918 PRINTS P-type cation-transporting ATPase superfamily signature 545 556 - -
Seca12g06886 918 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 355 557 IPR023299 GO:0000166
Seca12g06886 918 SUPERFAMILY Calcium ATPase, transduction domain A 135 233 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06886 Seca-Chr12 160860228 160862984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06886 1 909 Primary Pumps ATPases AT3G63380 58.170 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06886 K01537 - gmx:100784119 1241.48