Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06865 ATGTTTCATTTTGCATATATGGACAAGCTCTTGTTGAACTGTTGCATTGGATACTTTATTGTTTACTCTCTCTTGTTTGTTGTGCATGGCAAAGAATATTTATCATGCAATCAAACCCCATACCCACATGTGTGCAAGCATTACATTGGCAGCACAACATTATCAAGCCTTGATGCTCCTTCCTTCCATGACATGGCCCTTAAGGCCAGCATGGACCAAGCCATTGAAGCCCACAAACAAGTCTCCACCATGGAATTGAATAATTTTTTCAAGGACAATCATCGAGCCAAGTCAGCATGGGAAGATTGTTTGGAGCTGTATGAGGACACAATTCATCAACTCAACCGCTCAATCAGCTCAAACAATCTAAATGACAAGCTAACTTGGCAAAGTGCATCCATTGCCAACCATCAAACTTGCCACAATGGTTTCATTGACTTCAACCTTTCCTCTCACTTGAACTACTTCCCATCCATGTTAACCAATTTCTCCAAATTGCTTAGCAATTCTTTGTCCCTCAGCAAGACTATGGCTTTGGCTTCATCATCAACAACAACTAAACAAGTTGGTGGTCGAAGGTTACTTCTTTCAGATGGTTTCCCTAATTGGCTATCTTCTTCAGATAGAAAGCTTCTTCAAGATGCACCAAAAGCTGATATTGTGGTAGCTCAAGATGGCACTGGGAATTATAAGACCATATCAGAAGGTGTGGCTGCAGCTGCTAAGCTTAGTGAAAAAGAGAGAGTTGTTATTCACGTAAAAGCAGGTGTTTACAAAGAGAGTGTTGACATTAAGAGGTCAATGAAGAACTTGATGATCATTGGAGATGGAATGAGTTCCACTATTATTACTGCGGTTATGGGCGATGGATTCATCGCTCGAGACATGACCTTCGAGAACACGGCAGGGCCACAGAAGCACCAAGCGGTGGCTCTCCGTTCAGGCGCGGACCATTCGGTTTTCTACCGTTGCAGCTTCAAAGGTTACCAAGACACGTTATACGTCTACTCCCAACGGCAATTCTACCGTGATTGTGACATCTACGGCACCATTGACTTCATCTTCGGCGATTCAGTTACGGTCCTTCAGAACTGCAACATCTACGTGAGGAAACCGATGAGCAACCAGCAGAACACCGTAACTGCTCAGGGAAGAACGGATCCTAACGAGAACACCGGAATCGTCCTTCATAACTGCCGCGTAACCGCTGCAGGGGACATGAAAGCCGTTCAAGGCTCCTTCAAGACGTTTCTAGGGAGGCCGTGGCAGAAGTACTCGAGGACGGTGGTGATGAAGAGTAACTTGGATGGGTTGATTCATCCTTTAGGTTGGTCTCCATGGAGTGGAAGCTTTGCGTTGAGCACACTGTATTACGGTGAGTATATGAACACAGGAGCAGGTGCTAATACCGCAGGGAGGGTCAAATGGGGAGGGTTTCGTGTAATAAAGGATCCTTCGGAAGCAGTGAAATTCTCGGTTGGTAATTTCTTGGCTGGAGACGCTTGGATTCCTGATAGCGGTGTGCCTTTTGACGCTTCTTTGTGA 1545 0.4524 MFHFAYMDKLLLNCCIGYFIVYSLLFVVHGKEYLSCNQTPYPHVCKHYIGSTTLSSLDAPSFHDMALKASMDQAIEAHKQVSTMELNNFFKDNHRAKSAWEDCLELYEDTIHQLNRSISSNNLNDKLTWQSASIANHQTCHNGFIDFNLSSHLNYFPSMLTNFSKLLSNSLSLSKTMALASSSTTTKQVGGRRLLLSDGFPNWLSSSDRKLLQDAPKADIVVAQDGTGNYKTISEGVAAAAKLSEKERVVIHVKAGVYKESVDIKRSMKNLMIIGDGMSSTIITAVMGDGFIARDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDIYGTIDFIFGDSVTVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIVLHNCRVTAAGDMKAVQGSFKTFLGRPWQKYSRTVVMKSNLDGLIHPLGWSPWSGSFALSTLYYGEYMNTGAGANTAGRVKWGGFRVIKDPSEAVKFSVGNFLAGDAWIPDSGVPFDASL. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06865 514 NCBIfam pectinesterase inhibitor domain 35 177 IPR006501 GO:0004857
Seca12g06865 514 Pfam Pectinesterase 219 500 IPR000070 GO:0030599|GO:0042545
Seca12g06865 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 178 IPR035513 -
Seca12g06865 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 177 IPR035513 -
Seca12g06865 514 SUPERFAMILY Pectin lyase-like 215 511 IPR011050 -
Seca12g06865 514 Pfam Plant invertase/pectin methylesterase inhibitor 35 173 IPR006501 GO:0004857
Seca12g06865 514 CDD PMEI-like_3 34 150 - -
Seca12g06865 514 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Seca12g06865 514 SMART PMEI_2 29 173 IPR006501 GO:0004857
Seca12g06865 514 Gene3D - 214 514 IPR012334 -
Seca12g06865 514 FunFam Pectinesterase 213 514 - -
Seca12g06865 514 FunFam Pectinesterase 33 177 - -
Seca12g06865 514 PANTHER PECTINESTERASE 24 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06865 Seca-Chr12 160644159 160646846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06865 9 514 Carbohydrate Esterase AT1G23200 50.090 3.78e-179 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06865 - - lja:Lj4g3v3099630.1 802.742