Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06861 ATGGCAGCCAAACGTTTTTTCGATGATTCTGATCAAGACTCTGACAAGCCAAGCGACAAACGGATGAGAACTACTCCTTCAAGACCTTCTTTTGCTTCGGTAATAGGAGAAGTCGTTATGGTGAAAAACATGCAGAACCTTTTCTCAGGCTTGGAGCCTTTGCTTAGAAGAGTGGTGAATGAAGAGGTGGAGCGAGCGATGAGACATTGTATTCCACGATCAATGTCTAGGTCCTCTTCATTGAGAATCCAAGCATTAGAACAACCATCAAGCTTTCAACTAATGTTCATCAAAAGCCTCTCGCTCCCTATATTCACTGGAAGCAGGATACTAGACATGGATGGGAACCCAATCCATGTGGTTCTTGTTGACAAAACCGGTTCAGGTGAAGTGGTTCCAACAAGCCTTCCACATCCGATAAAATTAGAGATTGTGGTTCTTGATGGAGATTTCTCTGGTGGTGATAAGGAGACATGGACGAGTGAGGAATTCAACAGTCACATAGTGAAGGAGAGAACGGGAAAAAGGCCTTTGCTAACAGGGGAACTGAATCTGACTATGAGGGATGGAATTGCACCAATTGGAGATATAGAATTCACTGATAATTCAAGCTGGATACGTAGCAGGAAGTTCAGAGTTGCCGTTAGAGTCGCTCCGGGGAGTAATCCAACTCTCCGAATCCGTGAAGGCATCACTGAACCGTTTGTCGTTAAGGATCACCGTGTGTACAAGAAGCATCACCCACCAATGCTCAACGATGAAGTGTGGCGCCTAGAGAAGATTGGGAAAGACGGAGCTTTCCACAAGAAATTGTCCAAAGAAAAGATTACCACAGTGCAAGAATTTCTCAAGTTATCCGTTGTTGATCCTCATCGTCTCAGAAAGTTTGTATTTTGCAAACAGATTTTAGGCATTGGTATGTCAGAGAGAATGTGGGATGTGACAATCAAGCATGCAAAGACTTGCATCGTGGGCAACAAACTCTACGCCTATCGTGGGCCAAATTTTACTATCTTTCTCAATGCCATATGCCAGTTGGTTAGAGCTGATATCAACGGCCAAAACTTGCCTACCAGAGAACTGAGCAACATGAACAGGAGCTGTCTAGAGAAATTGGTGAGAGAAGCATATGCTAAATGGAATGAATTGGAGGAAATTGATGGGGTGTTGAATGATAACGTTGCTTTGTTAACCCAAGGTGAAACTGTGGAGCAATTTCCAAACAATCACCAAGCATCGCAAATAACATATGATCAGAACAACTACTATGGGGATAAATCCATAGAAGCTGGGAACTATGTACCAAGCCATAGTGCACAAATTGGGTATAGCGAGTGGGCAGTGAATGCAACATTTGCCACAGGATCACCAGTGAATGACATGCCTTTCAGCTTCTCAGAATCACAATCAGACGGTGATATAACGCCCTCAGGTTCAGGTTCAGTCATTCATGGTGCTGCAAGGTGGCATTAA 1473 0.4379 MAAKRFFDDSDQDSDKPSDKRMRTTPSRPSFASVIGEVVMVKNMQNLFSGLEPLLRRVVNEEVERAMRHCIPRSMSRSSSLRIQALEQPSSFQLMFIKSLSLPIFTGSRILDMDGNPIHVVLVDKTGSGEVVPTSLPHPIKLEIVVLDGDFSGGDKETWTSEEFNSHIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRVAPGSNPTLRIREGITEPFVVKDHRVYKKHHPPMLNDEVWRLEKIGKDGAFHKKLSKEKITTVQEFLKLSVVDPHRLRKFVFCKQILGIGMSERMWDVTIKHAKTCIVGNKLYAYRGPNFTIFLNAICQLVRADINGQNLPTRELSNMNRSCLEKLVREAYAKWNELEEIDGVLNDNVALLTQGETVEQFPNNHQASQITYDQNNYYGDKSIEAGNYVPSHSAQIGYSEWAVNATFATGSPVNDMPFSFSESQSDGDITPSGSGSVIHGAARWH. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06861 490 MobiDBLite consensus disorder prediction 466 490 - -
Seca12g06861 490 PANTHER OS02G0177800 PROTEIN 1 444 IPR012416 GO:0005516
Seca12g06861 490 Pfam Calmodulin binding protein central domain 250 322 IPR046830 -
Seca12g06861 490 Pfam Calmodulin binding protein C-terminal domain 327 386 IPR046829 -
Seca12g06861 490 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g06861 490 MobiDBLite consensus disorder prediction 1 28 - -
Seca12g06861 490 Pfam Calmodulin binding protein-like N-terminal domain 92 240 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06861 Seca-Chr12 160600114 160603345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06861 3 388 Calmodulin-binding Proteins AT5G57580 48.346 1.05e-113 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06861 - - gmx:100802257 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06861 12 160600114 160603345 Seca12g06861 12 160600114 160603345 ECH