Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06858 ATGGCGACTCCTTTGGACGGAGGAGGAGGAGTAGCGCTGCTTTCGAATTCCATGAGCAAGGTGGATTCCTCATCGGCTCTCAATGGCGGTTTGAAGTGCTCCAAACTGGAGTCGCCAATTTTGATTTTCTTGTTCTTTCACAAGGCGATACGGAATGAGCTTGACGCCATGCACCGATTGGCTATGGCATTCGCCACCGGCAATCGCTCCGATATTCAGCCGCTCTTCGACCGCTACCATTTCCTCAGAGCGATTTATAGGCACCACTCCATTGCTGAAGATGAGGTTATTTTTCCAGCTCTGGATAAACGTGTGAAGAATGTAGCTAAAACATATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGACCATCTCTTTGACCTGTTAAATTCTTCCATCTGTAATGATGAAAGTTTTCCAAGAGAATTAGCATCTTGCACGGGAGCTTTGCGGACATCAATTAGTCAACACATGGAGAAGGAAGAGGAGCAGGTATTTCCTTTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATGTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATACGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATATCGCCTGATGAATCTGAGGATTTACGAAATTGCTTAATCAAGATAGTGCCAGAGGAAAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAGGGGAGAAGTAGTGTTAGCACAGATGAAAGTGGTTTAGATAATTCTCAGCTTCAATATAATTTCAGCCCATTAAACCATCATGTTGGGAAAGTAAACTGTGTGCGCGAGTCCACAACAACTGGAAAAAGGAAGCATTCTGGATCCATGCTAGATGTTTCTGATGCCACTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAACACTCAGGAGATTTTACTAATATATCAGCTTTTAATGAAAGATTACAATTCATTGCTGAAGTTTGTATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGACGGGGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGTGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGAAGTTGAATTTTATGCTAAGTTATGCTCACATGCTGATCATATAATGGACACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGTGAACTTCTGTATCAAAGCTTATGCATGATGCCACTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTTACGGAAGATGAAGCAAAGATGTTTCTAAGAAACATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAATGAAGGTTTGTGTCTGTCTTCAGGCACATCGGGTTGCTGTCCTGCTCAAAGTCTTTCTGATATTGAAGAAAATATTGATTGGCCATCCTGTGCTTGTGCCTCTGCATCATCTATTAGACATTGCTCAGTACTAGCTGAATCAGATGGGAACAAAAGATCAGTCAAGCGAAACATATTGGAGTTACACAAGAATGGAGATGTACCAGAAACTTCAGAGACTGAAAGTATTCAGAAAAATTTTTGTAGTGCTAGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAACAATTTGGGGCTGAGTTCTCTTTCTACAGCCAAGTCCTTACGCTCCTTATCTTTCAGCTCATCTGCCCCATCTCTTAATTCCAGCCTTTTTATATGGGAAACAGAGAGCAGCTCATGTGATATTGGCTCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGTTGAATGATGGTGATGAGACAATTCTTCGGCAATTTAGTGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCACTTCATAACGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAACAATTATTTGAAGATATTTCTTGTGTTCTTTCTGAGTTTTCAGTCCTTCATGATGCCTTGCAGATGACCCATATGTCAGAGAATTTATGTGAAAGTAATTTTGGAATTTCTGATGGCAATGGTAGTGAGAATATCAAAAAATATAATGAACTTGCAACTAAGCTTCAGGGTATGTGCAAATCCATTAGGGTGACCCTGGACCATCATCTTTTCAGGGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTCACTGTAGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGATACATGGAAGCAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGACTCCAGCATCTATAGCACAAACAAAAACATCAGATCATAGCACTTCTCAAAGAGGTGCTGAAAGTCAAGAAAGCTTGGACCACAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGCGAAAGGCATATCTTGTACAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAGCAGAAAATACCTAAAGCTCCATCTGAAGGTTCATCTAATGGGGTAGAGATAGAAGGACATTCACCATCATTTCGAGACCCAGGGAAACATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCGATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCCATAGGGCCTATATGCATGACACCTTCGTGTAACGGACTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGACGATGAAAGGAATGTATATCATTGCCCATTTTGCAATCTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTCCATTGTATGAAATGTAATTGTTGCCTGGGGATTAAATCAGCATCTCATAAGTGTCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTTCTGTGATGACTTGTTCACATCAAGTGCTCCAGTCAGAGCTCTACCTTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAGGGACCGCAATCAGGTGAATACTTTCGTGTCTATTGCATGCTACTTTCGCATCATTCCTTTCAAAAGCTAA 3639 0.4084 MATPLDGGGGVALLSNSMSKVDSSSALNGGLKCSKLESPILIFLFFHKAIRNELDAMHRLAMAFATGNRSDIQPLFDRYHFLRAIYRHHSIAEDEVIFPALDKRVKNVAKTYSLEHKGESNLFDHLFDLLNSSICNDESFPRELASCTGALRTSISQHMEKEEEQVFPLLIEKFSLEEQACLVWQFLCSIPVNTMAEFLPWLSTSISPDESEDLRNCLIKIVPEEKLLQKVVFTWMEGRSSVSTDESGLDNSQLQYNFSPLNHHVGKVNCVRESTTTGKRKHSGSMLDVSDATGTHPIDEILLWHNAIKKELSEIAVETRKIQHSGDFTNISAFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESIQSEGASSNSEVEFYAKLCSHADHIMDTIQRHFHNEEVQVLPLARKHFSFKRQCELLYQSLCMMPLKLIERVLPWLVGSFTEDEAKMFLRNMQLAAPATDSALVTLFSGWACKARNEGLCLSSGTSGCCPAQSLSDIEENIDWPSCACASASSIRHCSVLAESDGNKRSVKRNILELHKNGDVPETSETESIQKNFCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFIWETESSSCDIGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLNDGDETILRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHDALQMTHMSENLCESNFGISDGNGSENIKKYNELATKLQGMCKSIRVTLDHHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKETPASIAQTKTSDHSTSQRGAESQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKIPKAPSEGSSNGVEIEGHSPSFRDPGKHVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPIFCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRNQVNTFVSIACYFRIIPFKS. 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06858 1212 FunFam Zinc finger protein-related isoform 1 1116 1165 - -
Seca12g06858 1212 MobiDBLite consensus disorder prediction 880 905 - -
Seca12g06858 1212 CDD RING-H2_Pirh2-like 1120 1163 - -
Seca12g06858 1212 Gene3D nmb1532 protein domain like 641 884 - -
Seca12g06858 1212 SUPERFAMILY CHY zinc finger-like 987 1048 IPR037274 GO:0008270
Seca12g06858 1212 CDD Hr-like 42 168 - -
Seca12g06858 1212 Gene3D nmb1532 protein domain like 37 187 - -
Seca12g06858 1212 Gene3D nmb1532 protein domain like 299 446 - -
Seca12g06858 1212 ProSiteProfiles Zinc finger RING-type profile. 1125 1163 IPR001841 -
Seca12g06858 1212 MobiDBLite consensus disorder prediction 880 898 - -
Seca12g06858 1212 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1203 - -
Seca12g06858 1212 Pfam Hemerythrin HHE cation binding domain 645 735 IPR012312 -
Seca12g06858 1212 Pfam Hemerythrin HHE cation binding domain 296 430 IPR012312 -
Seca12g06858 1212 Pfam Hemerythrin HHE cation binding domain 44 170 IPR012312 -
Seca12g06858 1212 SUPERFAMILY RING/U-box 1119 1166 - -
Seca12g06858 1212 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Seca12g06858 1212 SUPERFAMILY Zinc hairpin stack 1058 1114 IPR037275 -
Seca12g06858 1212 CDD Hr-like 647 807 - -
Seca12g06858 1212 CDD Hr-like 299 428 - -
Seca12g06858 1212 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Seca12g06858 1212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1165 IPR013083 -
Seca12g06858 1212 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06858 Seca-Chr12 160535266 160546352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06858 1 1194 C2H2 Transcription Factor Family AT3G18290 65.293 0.0 1587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06858 K16276 - gmx:100801725 2174.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06858 12 160535266 160546352 Seca12g06858 12 160535266 160546352 ECH
Seca12g06858 12 160535266 160546352 Seca12g06858 12 160535266 160546352 PCT