Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06850 ATGGCTGAATTCACAGCAAGTTTGCAAAGTTTTAGGCCCTCATTTCCTTTCTTAGACATTGATGACATGGAACTGATAAACCAATTCAAAGGGGTGAATCCACATGTCCTTGACAACTCAATTTTGAATATGCAGAACTTGATGCCATTCTCCAGTGACAGCCTCTTGGGCTCTTCAGAACCTGAATTTCCAGGAAACTTGTTGTTGGAAGAAAATTTTCAAGGCCTTTTGCATTTTGTCAATCACAATGCAGCTCCAGTTTCAGTTCCTATTTCTTCAGCAGAAAATGAAATCCATGAAGGTAAAAAGAGGAAAGCAACAGATATGCCTGGACCCAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAATGGAAGCAAGAAAAAAGATAGTTCTGGCAGAGGCAAAAGAGTAAAAAGGGATGTAACAGAAGAAGACCAAAAACCAAAGGAAGTGGTTCATGTTAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTAAGGTGCTTACAGAACATTGTCCCAGGATGTTACAAGACAATGGGTATGGCGATAATGTTGGATGAGATCATAAACTATGTCCAGTCATTGCAGCAACAAGTGGAGGTAAGTGATGTGATAAAAAGTCTAAAGAAAAAGTAG 684 0.3962 MAEFTASLQSFRPSFPFLDIDDMELINQFKGVNPHVLDNSILNMQNLMPFSSDSLLGSSEPEFPGNLLLEENFQGLLHFVNHNAAPVSVPISSAENEIHEGKKRKATDMPGPSSANSTPAVSENGSKKKDSSGRGKRVKRDVTEEDQKPKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQQQVEVSDVIKSLKKK. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06850 227 Gene3D - 157 224 IPR036638 GO:0046983
Seca12g06850 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 217 IPR036638 GO:0046983
Seca12g06850 227 MobiDBLite consensus disorder prediction 127 167 - -
Seca12g06850 227 MobiDBLite consensus disorder prediction 110 126 - -
Seca12g06850 227 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 216 IPR024097 GO:0006355
Seca12g06850 227 SMART finulus 167 217 IPR011598 GO:0046983
Seca12g06850 227 MobiDBLite consensus disorder prediction 97 167 - -
Seca12g06850 227 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Seca12g06850 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06850 Seca-Chr12 160462336 160463969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06850 37 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 50.761 1.83e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g06850 HLH 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06850 - - gmx:100806942 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06850 12 160462336 160463969 Seca12g06850 12 160462336 160463969 ECH