Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06842 ATGAACCTAGTAATGAATTCCCCTTCTGATAACCAAAGTACAACATCCAGTGAATTGGGCAGCCCAAATGCCTTTTTCAATGGAATCAATCAAAATGGGCATTTAATATCCATTCATGGTGAGGTGGAAGCCAAACATCGCTTGCTTTTGGTTCAGTGGTTAACTAGTCTTATTCCTTCCTTGAATTTTTCAATAAATGTCACGGATGGTGAGTTAAGGGCATGCTTGAGCAATGGCACAGTTTTGTGCCAGATACTGAACAGGCTACGACCTGGTTCCGTGACTGTGGTTAGTGAGTCTGATCATTCTCTGCCATCACAATCAGAAAATGTTAGAACGTTTCTGAAAGCTTTGGATGGATTGGGCTTGCCCCGGTTTGAAATATCAGACCTAGAGAAGGGATCTATGAAGCCTGTTGTGGATTGTCTTTTAACACTTAGAGCGAAAAGTTTGCAGAATGCTTTGGGAGATAATGTTTCTGTATCTAGTTCCAACTTTGCAAGCTCTCGTGGGAGTTCACCTTCCAGTTTTCTTTTTTCACCACCAACTGGTGTAGACATAAGGAGGGTTTCATCTGACTCAAGGTTTCAACGTGCATTGGGTAGCCCTGTTATGACAGAATCTTCAACTTCATTGATATACCAAGTTGGTCATAAGTTCCATGAGGTGTTTCAAGTGAAACCTGGAAGCTACGCAGATCTTCCTGCTGCAAAAATATCAGAAATGATGAAATCAAACAGTTTAGATAATGCTCCCACACAGTCGCTTCTAAGTGTAATCAATGGTATTCTTGAAGAAAGTGTAGAAAGAAGAAATGGCGAAATACCTCATCGTGTGGCATGCTTGTTGAGAAAGGTGTCTCAAGAGATTGAGCGGCGCATATCAACTCAAGCTGAACATATCCGAACTCAAAATAATCTTTTTAAGGCTCGGGAAGAAAAATATCAATCGAGAATAAGAGTACTGGAGGCACTTGCATCTGGAACTAAAGAAGAGAGTGAGATATATTCTAGCCAGCTTCAGCAGTTGAAGGCTGAGAAGATCAAAGAGGAAGAAAAGAAGGAAGATGAAAAAGATATCATTAGGTTGGTGAAAGAGCAGGAGGACAGAAATTCAGAAATTTCAGCATTGAAGCAAGAACTGGAAACAACCAAGAAAACATATGAAGTACAATGCTCACAGTTGGAAGAAGCAGCTGAGGGTGCTAAAGCAGAATTGAGACAGAAGTCTCAAGAATATGAGCATCGATTGGAAGAATTGAGAAATGAGGTTGAGGAGATCAAAGAGGAAGAAAAGAAAGCAGATGAAAAAGATGCTATTAGGTTGATGAAAGAGAAGGAGGACAGAAATTTGGAAATTTCAGCATTGAACCAAGAACTGGAAACAACCAAGAAAACATGTGAAGTACAATGCTCACAGTTGGAAGAAGAAGCTAAGGGTGCTAAGGCAGAATTGAGACAGAAATCTCAAGAATATGAGCATCGATTGGAAGAATTAAGAAATAAAGTTAAGGAGCTTAAGGCTTCTTGTGATTCAAAATATCAGAAGTGGAGCATGGAAAAGAACCAATTTCAGACTGCTATAAAATTTCAACTTAGTTCCCTACAGAAATTGAAATTATCTTGGGAATCCATTAAGCAAGATGTTATGAAAGAGCAGACGGTTTATGTAGAGGAGTGTAATCGATTAGGTGTAAATCTTAAATCACTTGTACAAGCAGCTGAGAACTACCAAACTGTTCTTGCTGAAAATCGAAAATTGTTCAATGAAGTTCAAGAATTAAAAGGAAATATCAGAGTATATTGTCGAATTAGACCATTTCTTTCTGGAAAAAAGGAAAAACAGTCTATTGTACAGCACATTGGTGAAAATGATCTGGTTGTGGCAAATCCCTCCAAAGAAGGGAAAGATGCTCTTAGATCATTCAAGTTCAATAAGATTTTTGGCCCTGCCTCTACTCAAGTGGAGGTATACTCTGACATTCAATCCTTTGTAAGATCAGTACTGGATGGGTATAATGTATGTATGTTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGACTGGCCCAAATGGAGCAACAAGTGAGAACCTTGGTGTTAATTATAGAGCTCTAAACGACCTCTTCAAAATTTCTACAAGTAGAGCAGGCTTAGTAGACTATGAGATTGGAGTTCAAATGGTTGAGATATATAATGAGCAAGTGCGACTTTGTTCTTCTAGTTTTTTCTTCTCTGGTTTCCTTGATTTGCACACACTTGGGATATTGAATCACACTCAATCCAACGGTATAGCAGTACCTGATGCTAGCATGTTCCCTGTTAAATCACCTTCAGATGTGGTTAAGCTAATGGACATTGGACTTAAAAATAGAGCCATTGGTGCAACAGCTATGAATGAAAGAAGTAGCCGTTCTCACAGTGTGATCTCAATTCATGTTCGTGGGAGGGACTTGAACTCTGGTACTACTCTTCTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGATCGGTCTGAAGTAACTGGGGATAGGCTTAAGGAAGCACAACATATAAACAAGTCACTATCCGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAGAGCTCCCATGTACCATATAGAAACAGCAAGCTCACTCAACTTCTGCAAACTTCTCTTGGTGGTCAAGCAAAGACACTCATGTTTGTCCAAATCAACTCAGACGTAACTTCATTTTCTGAAACTCTAAGCACTTTAAAGTTTGCTGAGAGAGTTTCTGGAGTTGAATTAGGAGCTGCACGAAGTAACAAAGAAGGCAAAGATGTCAGAGAATTAATGGAACAGGTGGCTTCCATGAAGAACACTATCTTGAAAAAAGATGAGGAGATTGAGCGGCTTCAATTACTGAATGCTTCAGTTGGTGGTATTAAACAAAACCAAAAACCATTAGCTAGAAGTTATAAGCCCCTTGAAGCTGATACCCAGCAGCCAATGGAGGATCCTATACACCGAAATGAAATTCCCCATCAATCTGAAATTGCTGGGGGAGATGTAGTAAAGAATGAAACTTTGGGATTTGCAGATGCAGATTTTCTTGAAAGATCAAGTGATAGTGAAAGTGGTCTTGCTCAGGGCATAGAAACTGATGGTTCTTCTGAAGGCACAAAATCATCTGATAAATCTAAAGCAGTACGAAAAAATGTTCCACCGACAAAGAAATTAGCCCGAACCCCATCTACCGCTGCTATAATAAAGGATTCCCTGAAGAAAGCAGTACCACCAGGGATTAAGAAAAGTGCCAGTATTGGCCAACTTATTAAAGGTTCTAAACGGTGGCAGTAA 3345 0.3958 MNLVMNSPSDNQSTTSSELGSPNAFFNGINQNGHLISIHGEVEAKHRLLLVQWLTSLIPSLNFSINVTDGELRACLSNGTVLCQILNRLRPGSVTVVSESDHSLPSQSENVRTFLKALDGLGLPRFEISDLEKGSMKPVVDCLLTLRAKSLQNALGDNVSVSSSNFASSRGSSPSSFLFSPPTGVDIRRVSSDSRFQRALGSPVMTESSTSLIYQVGHKFHEVFQVKPGSYADLPAAKISEMMKSNSLDNAPTQSLLSVINGILEESVERRNGEIPHRVACLLRKVSQEIERRISTQAEHIRTQNNLFKAREEKYQSRIRVLEALASGTKEESEIYSSQLQQLKAEKIKEEEKKEDEKDIIRLVKEQEDRNSEISALKQELETTKKTYEVQCSQLEEAAEGAKAELRQKSQEYEHRLEELRNEVEEIKEEEKKADEKDAIRLMKEKEDRNLEISALNQELETTKKTCEVQCSQLEEEAKGAKAELRQKSQEYEHRLEELRNKVKELKASCDSKYQKWSMEKNQFQTAIKFQLSSLQKLKLSWESIKQDVMKEQTVYVEECNRLGVNLKSLVQAAENYQTVLAENRKLFNEVQELKGNIRVYCRIRPFLSGKKEKQSIVQHIGENDLVVANPSKEGKDALRSFKFNKIFGPASTQVEVYSDIQSFVRSVLDGYNVCMFAYGQTGSGKTYTMTGPNGATSENLGVNYRALNDLFKISTSRAGLVDYEIGVQMVEIYNEQVRLCSSSFFFSGFLDLHTLGILNHTQSNGIAVPDASMFPVKSPSDVVKLMDIGLKNRAIGATAMNERSSRSHSVISIHVRGRDLNSGTTLLGNLHLVDLAGSERVDRSEVTGDRLKEAQHINKSLSALGDVIFALSQKSSHVPYRNSKLTQLLQTSLGGQAKTLMFVQINSDVTSFSETLSTLKFAERVSGVELGAARSNKEGKDVRELMEQVASMKNTILKKDEEIERLQLLNASVGGIKQNQKPLARSYKPLEADTQQPMEDPIHRNEIPHQSEIAGGDVVKNETLGFADADFLERSSDSESGLAQGIETDGSSEGTKSSDKSKAVRKNVPPTKKLARTPSTAAIIKDSLKKAVPPGIKKSASIGQLIKGSKRWQ. 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06842 1114 Gene3D Kinesin motor domain 539 931 IPR036961 -
Seca12g06842 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 967 IPR027417 -
Seca12g06842 1114 SUPERFAMILY Calponin-homology domain, CH-domain 42 147 IPR036872 -
Seca12g06842 1114 Coils Coil 326 360 - -
Seca12g06842 1114 MobiDBLite consensus disorder prediction 1036 1114 - -
Seca12g06842 1114 Pfam Calponin homology (CH) domain 50 147 IPR001715 GO:0005515
Seca12g06842 1114 SMART kinesin_4 595 937 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g06842 1114 MobiDBLite consensus disorder prediction 1038 1053 - -
Seca12g06842 1114 Coils Coil 943 963 - -
Seca12g06842 1114 Coils Coil 577 597 - -
Seca12g06842 1114 Gene3D - 434 475 - -
Seca12g06842 1114 Gene3D - 355 396 - -
Seca12g06842 1114 ProSiteProfiles Calponin homology (CH) domain profile. 44 151 IPR001715 GO:0005515
Seca12g06842 1114 PRINTS Kinesin heavy chain signature 671 692 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g06842 1114 PRINTS Kinesin heavy chain signature 830 848 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g06842 1114 PRINTS Kinesin heavy chain signature 799 816 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g06842 1114 PRINTS Kinesin heavy chain signature 879 900 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g06842 1114 Coils Coil 364 440 - -
Seca12g06842 1114 Coils Coil 443 516 - -
Seca12g06842 1114 Gene3D - 38 152 IPR036872 -
Seca12g06842 1114 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 41 153 - -
Seca12g06842 1114 ProSiteProfiles Kinesin motor domain profile. 597 929 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g06842 1114 Pfam Kinesin motor domain 603 927 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca12g06842 1114 SMART ch_5 46 149 IPR001715 GO:0005515
Seca12g06842 1114 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 539 931 - -
Seca12g06842 1114 PANTHER KINESIN-LIKE PROTEIN KLP-3 445 1078 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06842 Seca-Chr12 160391692 160404080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06842 334 963 Calmodulin-binding Proteins AT5G65930 31.420 7.78e-68 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06842 K10406 - aprc:113855795 1358.97