Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06841 ATGATCACAGACATGAAAGGTGCTGCAGGTGCCTTGGGAGGCAAGACAGCAAGAGCTTGTGATAGCTGCCTAAGGAGAAGAGCAAGGTGGTTTTGTGGAGCAGATGATGCTTTCCTCTGCCATGGCTGTGACACTTTGGTTCACTCTGCAAATCAATTAGCCAGCAGACATGAAAGGGTTAGGCTTCAAACTGCATCCTGTAAGGTAACTGCTCACACATGGCACAGTGGATTCACACGCAAAGCAAGAACCCCACGTCACAACAAGCAACACTTGGCACTTCAACAACGTCTCAAAGACCAAGTTCTTTTCAACAACACTAGTATTCTTCCCCTTGTTCCTGAGCTTGGAGTTGAAGAACCTCTCATAGTGGATGATATTGAGGCTGAGGAGCAGCTTCTATGTCGTGTGCCTGTTTTTGACCCTTTTGATGCAGAGCCTTGCAATATATTGAGGGATGAGAGATTGGACATCACCATAAAAAAAGATGCTGCTGATGAAGAACAAGAAGAAGAAGCTTGTGACTTGGACAGTTTCTCTGAGTTTGATGTGGATCTTGCTGAGTTTGCAGCTAGTGTTGAAAGCCTACTTGGGAGTGGAGTTGATGAGGATAATTTAGGTGAGGTTTTTAATCATAAAGAAGAAAAAAATGGAATAATAGATGCATATGTAGGAGAGGTAGCCAAAAGTGCAATGGTGAAAGTTAAGAATGAAGAAGAAGTTGATGCTGATGCTGATACAGTTTGTCATTTGGAGTCAGTTTTTGACATGACAAGTGAAGATGCTTTTCATTGGAATAACATTGAGTCAGTGCTATCACCTGTACAGGAAGAGAAAGAGCCTATGGTGGCTAGTAATAGTGGTAGTGAAATAAGTAATAAAGAGGGAACAAAAAGAGACATCTTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACTGGAAACCCTCCAAATTTCAACTCTGATGATGATTCTTGGCTAATCTGCTTGGGTTCAAGTGGTGCAGATGGGGAAGTAAGAAGCTTAAGGGGGCACCTTGTAGATGGGGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAGAAGAGAAGAACTCGTTTGTTTGCAAAGAAAATAAGATATGAAGTGAGGAAGTTGAATGCAGAGAAGAGACCTAGAATGAAAGGTCGTTTTGTCAAGAGGACATGCTTTGTTGGAGTCAATGCTTTTCCAACTTACCACTGA 1251 0.4245 MITDMKGAAGALGGKTARACDSCLRRRARWFCGADDAFLCHGCDTLVHSANQLASRHERVRLQTASCKVTAHTWHSGFTRKARTPRHNKQHLALQQRLKDQVLFNNTSILPLVPELGVEEPLIVDDIEAEEQLLCRVPVFDPFDAEPCNILRDERLDITIKKDAADEEQEEEACDLDSFSEFDVDLAEFAASVESLLGSGVDEDNLGEVFNHKEEKNGIIDAYVGEVAKSAMVKVKNEEEVDADADTVCHLESVFDMTSEDAFHWNNIESVLSPVQEEKEPMVASNSGSEISNKEGTKRDIFLRLNYDEVITAWASQGSPWTTGNPPNFNSDDDSWLICLGSSGADGEVRSLRGHLVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGVNAFPTYH. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06841 416 SMART bboxneu5 15 62 IPR000315 GO:0008270
Seca12g06841 416 CDD Bbox1_BBX-like 19 62 - -
Seca12g06841 416 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 404 - -
Seca12g06841 416 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Seca12g06841 416 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Seca12g06841 416 Pfam CCT motif 361 403 IPR010402 GO:0005515
Seca12g06841 416 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06841 Seca-Chr12 160385901 160387295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06841 5 403 C2C2-CO-like Transcription Factor Family AT1G25440 43.953 4.16e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca12g06841 zf-B_box 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06841 - - gmx:100812563 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06841 12 160385901 160387295 Seca12g06841 12 160385901 160387295 PCT