Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06839 ATGGAAATGGCAGCAGGGCAATCTAGAAAACAAGGAAGAAAAAGTAAAGGAAAAGAAAAGGTGACAGGGAAGAATGAGAATGTACAAACTTTCAGGAAAATCAGAATTTCATGCAGTGACCCATATGCTACAGATTCTTCAAGCGAAGATGATGGCAACAACAAGAAGAAAGGAAAGAAGAGCTCATCGAGCATATACAAAGGTGTTCGGTATAGGAAATGGGGGAAATGGGCTTCTGAGATTCGTGACCCTTTTAAAGGGGTCAGAATATGGCTTGGTACCTATGATACTGAACTTGAGGCTGCTATTGCTTATAGCAAAAAGAAAAAAGAGTTTGAGGTCAAATTACAAGAACAGAACACAAACAATCCTAATTTGAAAGATAGCAAACAAGGTTTGATTTGA 405 0.3827 MEMAAGQSRKQGRKSKGKEKVTGKNENVQTFRKIRISCSDPYATDSSSEDDGNNKKKGKKSSSSIYKGVRYRKWGKWASEIRDPFKGVRIWLGTYDTELEAAIAYSKKKKEFEVKLQEQNTNNPNLKDSKQGLI. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06839 134 CDD AP2 65 105 IPR001471 GO:0003700|GO:0006355
Seca12g06839 134 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 113 - -
Seca12g06839 134 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Seca12g06839 134 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Seca12g06839 134 MobiDBLite consensus disorder prediction 27 48 - -
Seca12g06839 134 MobiDBLite consensus disorder prediction 1 63 - -
Seca12g06839 134 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Seca12g06839 134 ProSiteProfiles AP2/ERF domain profile. 65 124 IPR001471 GO:0003700|GO:0006355
Seca12g06839 134 Pfam AP2 domain 65 110 IPR001471 GO:0003700|GO:0006355
Seca12g06839 134 SMART rav1_2 65 130 IPR001471 GO:0003700|GO:0006355
Seca12g06839 134 SUPERFAMILY DNA-binding domain 64 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06839 Seca-Chr12 160375133 160375699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06839 26 113 AP2-EREBP Transcription Factor Family AT1G68550 38.462 2.95e-19 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g06839 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06839 - - gmx:102661579 102.834