Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06812 ATGGGATTGGGACGGATAGAGGAAGAAGTAAGAACAACTTGTCTTTTATTGTTTATCTGTGAAGTGTGTGAGTTTTCATTTCAAGACTCATGGTCTGATTTCAATCTGGAACACTTTGAATTGGTTGGGTGTAAAAAGACCATGCCCAAATGGACAAAGCAAGTGAAGATTTGCTTAAAAACAGGACTTGAGGGGTCATTGTATGATGGATATAGTTGGATAAAATATGGGCAAAAGGATATTCTTGGAGCTAAGTTTCCCAGATGCACACATAGAAATTCACAAGGATGTCTAGCAACAAAGCAAGTTCAAAGGTCAGATGAAAACCCATCAATAATTGAGGTGACCTATAAAGGTTCAGAAACTCGCCTTCTCAAACTGTCTCGCCGTCTCCTTCCTTCCTCGGAGAAGAAGTCTCAGCTCGTTAACGAGTCGGAGCTCCGACCGGAAGGCCTATCGGCGCCGTTGATTTCCGGGCTCTCCCAAGGAGCCGCCGAGTACTTCATGAGAATCGGAGTTGGACAACCTGTGCAGCCCTTCTACATGATTCCCGACACCGGAAGCGACGTGAACTGGCTTCAATGCAAGCCCTGTGTCCGCTGTTACAACCAATCCGACCCGATTTTCGACCCGTCTAGGTCATCCTCCTACGCAAAGGTCACATGCGAATCAAAACATTGCAAGGAACTCGGCACTGAGTCTTGTTGTGATCACGAATGTGAGTACGAGGTGACTGTGCTGACGGTGTCGTTTGATATGAGTGATGGCCAATAG 774 0.4625 MGLGRIEEEVRTTCLLLFICEVCEFSFQDSWSDFNLEHFELVGCKKTMPKWTKQVKICLKTGLEGSLYDGYSWIKYGQKDILGAKFPRCTHRNSQGCLATKQVQRSDENPSIIEVTYKGSETRLLKLSRRLLPSSEKKSQLVNESELRPEGLSAPLISGLSQGAAEYFMRIGVGQPVQPFYMIPDTGSDVNWLQCKPCVRCYNQSDPIFDPSRSSSYAKVTCESKHCKELGTESCCDHECEYEVTVLTVSFDMSDGQ. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06812 257 ProSiteProfiles WRKY domain profile. 62 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06812 257 Gene3D WRKY domain 49 118 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06812 257 PANTHER ASPARTYL PROTEASES 121 245 IPR001461 GO:0004190|GO:0006508
Seca12g06812 257 ProSiteProfiles Peptidase family A1 domain profile. 167 257 IPR033121 -
Seca12g06812 257 Gene3D Acid Proteases 141 253 IPR021109 -
Seca12g06812 257 SMART WRKY_cls 67 122 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06812 257 Pfam Xylanase inhibitor N-terminal 167 245 IPR032861 -
Seca12g06812 257 SUPERFAMILY Acid proteases 162 248 IPR021109 -
Seca12g06812 257 SUPERFAMILY WRKY DNA-binding domain 67 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06812 257 Pfam WRKY DNA -binding domain 69 120 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06812 Seca-Chr12 160066657 160069401 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06812 45 122 WRKY Transcription Factor Family AT4G11070 63.415 1.15e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g06812 TAXi_N 3.6e-24 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06812 K22683 - qsu:112013837 144.436