Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06810 ATGCCCAGATGGACAAAGCAAGTGAAGATTTGCTTAAAAACAGGACTCGAGGGGTCATTGGATGATGGATATAGTTGGATAAAATATGGGCAAAAGGATATTCTTGGAGCTAAGTTTCCCAGAGGATATTACAAATGCACACATAGAAATGCACAAGGATGTCTAGCAACAAAGCAAGTTCAAAGGTCAGATGAAAACCCATCAATAATTGAGGTGACCTACAAAGGAAGACACACATGCACGCAAGCTAAGCATTTAAACAAGGAATTTCCATAA 276 0.3913 MPRWTKQVKICLKTGLEGSLDDGYSWIKYGQKDILGAKFPRGYYKCTHRNAQGCLATKQVQRSDENPSIIEVTYKGRHTCTQAKHLNKEFP. 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06810 91 Gene3D WRKY domain 5 83 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06810 91 ProSiteProfiles WRKY domain profile. 15 78 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06810 91 Pfam WRKY DNA -binding domain 21 80 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06810 91 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 86 IPR044810 GO:0003700
Seca12g06810 91 SMART WRKY_cls 20 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06810 91 FunFam WRKY transcription factor 53 6 83 - -
Seca12g06810 91 SUPERFAMILY WRKY DNA-binding domain 19 82 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06810 Seca-Chr12 160056451 160057563 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06810 1 91 WRKY Transcription Factor Family AT5G24110 60.440 5.56e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g06810 WRKY 5.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06810 - - gmx:100790050 174.866