Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06797 ATGACAAGTCGACTGAAGGAGGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTTACGCCGAATCGAAGATGTATTAACTGCAATAGCCTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTTACACATCGAGTAAAATCAATTTCAATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGGGGAAATCAGCGTGCAAAAGAAATATATTTTAAAGAGTGGGATCCACAACGTCATTCTTTGCCGGATAGCAGTAATGTTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCAGTGGAGAGAGAACCTTTGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATCTTTATGAAAACAAGAGGATCGAGACATATCAGGGAGCACCTAAGAGTCCCCCATATGAGGACACATATGAACGTCGTTACACTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAAGCAATATGGTGAATACAAGAGAAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGGGAAGATAGATTTGGGGATGGACAGAAATTCGAAGATCATAGAATATCTGATGGAGATAATAAGGTGGGAAACCAATCACCTGAGCGAGCCAAAGATCTGGGTTCTTCAAGCCCACCAGTGGCTCGACCTGTAAGAGATATTTTAGGAGAAAATGTAGTACCTCTTCGAATCAGTGAACCCCCCAAAACAAACAGTGGTCAGGCTACTAATGGCTCAGCACTCACACAGAGAACTGCATCTTCGAGTAGCTTGGCATCCAGCAATGGAACCCCAGCAGAAGTTAAGCTTGAGACTATTAAGAGCCTTATTGATTTTGCTGATGATCCTGAACCACCTGTTGCTCCAGCAATTCCTCAAGCCCAACAAACTACTGTGGCTCAACTTGTGATGCCAGCAAATTCCAGCGATAACAACTGGGCCTCTTTTGATGTTGCTCCTGAGGCAAAAGCATCCCATGGTCCTTCAAACGTAAATCCACTGGATTCTGTGCTGTCCCAGTTGTCAGTACCGGCATCTTTACCTTCTCATGTTTCTGGAGTCCAAGGTGATCTCCGTCTTGTAATAGCTATTATTGGGAGCTGTATGGCAACATTGCTAAGAATCAATGACTCATCTGTTTTACCTGCAGGGTCTGTGATGGGATCAGCTCTTACTGCAACTGCTGTTGGTGCTCCAACTGTTAGCAGCTTCTCAACATTCCCAGCTAGTGGTGCTTCAGTAACCTCTTCTGGATTAACAACTGCATCGTCTCTCAATAATGCAGGACAGTGGGCCAATTTGCAGCATCAGCAACCTTTGTTCACCACTACTGTTAGTCAGCATGTTATTCAACAATCTACACCACCTGTAGGTGGAGCTTTGAATAATCAGCCCTGGAATATGCCTTCTGTACCTGCAGTACAGGGGCATCCAAGCACAACAATGCTACATGCTTCCCACCATATCTCAAATTCTGTCAATGAGGCTAAATCCAGTGTTGTTTCACAACCTTCTACGGTAGACATAAAACCAAGTGGAAGAAATGAGCTTCCTGAGGATCTATTCACTGTAAAATATTCATCCTTCCCTGCTCCAGTTCCAGGTTGGCAAATGGGTCAACCACCTAGCATGGGTATCTCAACTCAATATAATAATATGGCGGCCATGCCAAGTTTTCTGCCACCATCAAAATCAACAAATCCATTTGATGTCAACAATGAACCAACTCCAGTTCAAGCCCCAACTTTTCCTTCCATGTCATCTTTGCAAAGTGCTCTGCCTAGTGTAACACCACCAGCCACAATGCAGCCTTCAAACATGGGTAATCTGTCTCTTCCCTGGAAACCACCCTCATCATCATCATATGTATCAGTGCTGCCTCCACAAGCACAAACTCTTGCGTCAGCAATGGGACCAGGCGCATACATGGGGCAACAAATGCCAACAAACATTCCAATGCCAAGGCATCAAGGAATTGGGAATTTTGGAACTGAGGGAGCTGCTTTTGGCTTCTCAACCCCTGCTACCCCAAACCCCTTCCCTGCAGGAGGGAACCCTTTTGGATGA 2160 0.4468 MTSRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFSGERTFDKPPRVKGDKDDLYENKRIETYQGAPKSPPYEDTYERRYTDRSSPGGRSPGYDQENKQYGEYKRSPGRPPIINDWRREDRFGDGQKFEDHRISDGDNKVGNQSPERAKDLGSSSPPVARPVRDILGENVVPLRISEPPKTNSGQATNGSALTQRTASSSSLASSNGTPAEVKLETIKSLIDFADDPEPPVAPAIPQAQQTTVAQLVMPANSSDNNWASFDVAPEAKASHGPSNVNPLDSVLSQLSVPASLPSHVSGVQGDLRLVIAIIGSCMATLLRINDSSVLPAGSVMGSALTATAVGAPTVSSFSTFPASGASVTSSGLTTASSLNNAGQWANLQHQQPLFTTTVSQHVIQQSTPPVGGALNNQPWNMPSVPAVQGHPSTTMLHASHHISNSVNEAKSSVVSQPSTVDIKPSGRNELPEDLFTVKYSSFPAPVPGWQMGQPPSMGISTQYNNMAAMPSFLPPSKSTNPFDVNNEPTPVQAPTFPSMSSLQSALPSVTPPATMQPSNMGNLSLPWKPPSSSSYVSVLPPQAQTLASAMGPGAYMGQQMPTNIPMPRHQGIGNFGTEGAAFGFSTPATPNPFPAGGNPFG. 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06797 719 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Seca12g06797 719 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Seca12g06797 719 MobiDBLite consensus disorder prediction 198 224 - -
Seca12g06797 719 PANTHER ARFGAP/RECO-RELATED 1 719 IPR044820 GO:0005096
Seca12g06797 719 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Seca12g06797 719 MobiDBLite consensus disorder prediction 263 296 - -
Seca12g06797 719 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Seca12g06797 719 CDD ArfGap_AGFG 12 122 - -
Seca12g06797 719 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Seca12g06797 719 MobiDBLite consensus disorder prediction 127 146 - -
Seca12g06797 719 MobiDBLite consensus disorder prediction 127 296 - -
Seca12g06797 719 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Seca12g06797 719 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Seca12g06797 719 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Seca12g06797 719 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06797 Seca-Chr12 159932922 159941223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06797 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 3.50e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06797 12 159932922 159941223 Seca12g06797 12 159932922 159941223 ECH