Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06795 ATGAAGAAGGAAGCTAATTACTCCTCCAATCTCACACTCCTCATTGCGGTGTTTCTAGGCACACTCTCCCTCTGTGCCTCCCACCAAAGCAATGGAGCACTCACGAACGCTGAAGCCACATACATCAGGCAACGCCAGCTTCTTTATTACAGGGACGAGTTCGGTGACAGAGGAGAGAACGTCACCGTAGACCCCTCTCTTGTTTTCGAGAATGACCGTATCAAAAATGCTTATATAGCTTTACAAGCTTGGAAGCAAGCCATTCTCTCAGATCCCAGAAACTTCACGGCTAATTGGTTTGGATCCAATGTGTGCAACTACACCGGGGTTTACTGTGCACCGACGCTCGACAATCCCAACATTCGTACCGTTGCCGGCATTGATCTCAACCATGCCGATATTGCCGGATACTTGCCAGAAGAGCTTGGTCTTCTGGAAGATCTTGCGCTTTTCCACATCAACACCAACAGATTCTGTGGCACTGTGCCGCACAAGTTTGACAAGTTGAAGCTGCTTTTCGAACTGGATCTCAGTAACAACAGGTTCGCAGGGAAGTTCCCGGAGGTGATTCTTCGGCTTCCAACGCTCAAATTCTTGGACATCAGATTCAACGAATTCGAAGGAGCGGTTCCTAGGGAGTTATTCGACAAGGATCTGGACGCTATTTTCATCAATGCTAACCGTTTTGTCTTTGATCTTCCTGATAACTTTGGCAACTCACCGGTTTCCGTCATCGTTCTAGCGAACAACAGGTTCCACGGGTGCATTCCGGCGAGCTTGGGAAACATGTCCAACTTGAACGAGATTATTCTTATGAACAATGCATTCCGTTCCTGTTTACCTTCTGAGATCGGGTTGCTGAGAAACCTGACGGTTTTCGATGTGAGCTTTAATCAGTTGTTAGGTCCTTTGCCTGACACAATTGGAAACGTTGTGAGCTTGGAGCAGCTGAATGTAGCACACAACTTGCTCTCTGGGAAAATCCCTGCTAGCATTTGCATGTTGCCTAACCTTCGGAACTTTACTTATTCAGATAACTTCTTCACCGGGGAGCCACCGGCGTGCCTGAGCTTGCCGGCGTTTGATGACCGGAGGAACTGCTTGGCATCGAGGCCGTTACAGAAGTCTCAAGAACAATGTAAGTCGTTTTTGTCTAAGCCTGTGGATTGTAACTCCTTTGGGTGTAAACCATTTGTTCCTTCCCCACCCTCACCAACTAAACCTTCCCCACCCTCACCGACTAAACCTTCGCCCTCACCAGTTATTGCACCTTCGCCACCGCCGGTAGCGGTTCCTTCGCCAACACCGCCTGTAGTGGCACCTTCATCACCACCGCCTGCAGTGACACCTTCCCCTTCACCACCTGCCTACCCTCCACATTCTCCTCCTTCACATCCACCACCACCTGCAGTGACACCTTTCCCTTCACCACCTGCCTACCCTCCACATTCTCCTCCTTCACATCCACCACCACCCTCTACTCCTCCGCCACCAAATTCACCACCAACACCCGCTCATATATTCTCCCCACCACCACCTTCTCCTTATTATAGTCCACCGCCGCTGCCATCCCCACATCCTCCTCACTCACCTCTGCCACCATCTCCACCGCCACCTCCTCCCTCTGTTCACTCACCACCCCCACCATATCCACCGCCTTGCATAGAACCTCCTCCACCCCCACCATCACCACCACCTTGTGAACAGCATCCACCCCCGCCCCCACCATCACCTATTCCCACACCTTACGTACCACTACCCTCCCCATCTCCCCCGCCGTCACCGGTGTATGTTTCTCCACCTCCGCCAGTTCACTATACTTACCCATCACCACCACCCCCTTCCCCGGTTCAATATAGTTCCCCTCCACCACCACCACCCCCTGTTCATTACGGTTCACCGGCGCCACCAGTATACCATTCTCCGCCGCTAGCATCACCGCCTCCGTGTCAAACTCCATCTCCACCTGCCCCTGTATATGAAGGGCCTTTACCACCTATCTTTAGAGTCCCATATGCATCGCCTCCACCGCCACCATTCTATTGA 2046 0.5186 MKKEANYSSNLTLLIAVFLGTLSLCASHQSNGALTNAEATYIRQRQLLYYRDEFGDRGENVTVDPSLVFENDRIKNAYIALQAWKQAILSDPRNFTANWFGSNVCNYTGVYCAPTLDNPNIRTVAGIDLNHADIAGYLPEELGLLEDLALFHINTNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPEVILRLPTLKFLDIRFNEFEGAVPRELFDKDLDAIFINANRFVFDLPDNFGNSPVSVIVLANNRFHGCIPASLGNMSNLNEIILMNNAFRSCLPSEIGLLRNLTVFDVSFNQLLGPLPDTIGNVVSLEQLNVAHNLLSGKIPASICMLPNLRNFTYSDNFFTGEPPACLSLPAFDDRRNCLASRPLQKSQEQCKSFLSKPVDCNSFGCKPFVPSPPSPTKPSPPSPTKPSPSPVIAPSPPPVAVPSPTPPVVAPSSPPPAVTPSPSPPAYPPHSPPSHPPPPAVTPFPSPPAYPPHSPPSHPPPPSTPPPPNSPPTPAHIFSPPPPSPYYSPPPLPSPHPPHSPLPPSPPPPPPSVHSPPPPYPPPCIEPPPPPPSPPPCEQHPPPPPPSPIPTPYVPLPSPSPPPSPVYVSPPPPVHYTYPSPPPPSPVQYSSPPPPPPPVHYGSPAPPVYHSPPLASPPPCQTPSPPAPVYEGPLPPIFRVPYASPPPPPFY. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06795 681 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 548 - -
Seca12g06795 681 SUPERFAMILY L domain-like 79 360 - -
Seca12g06795 681 Gene3D Ribonuclease Inhibitor 78 240 IPR032675 -
Seca12g06795 681 PRINTS Proline rich extensin signature 451 468 - -
Seca12g06795 681 PRINTS Proline rich extensin signature 408 429 - -
Seca12g06795 681 PRINTS Proline rich extensin signature 430 446 - -
Seca12g06795 681 MobiDBLite consensus disorder prediction 609 658 - -
Seca12g06795 681 Pfam Leucine rich repeat N-terminal domain 79 112 IPR013210 -
Seca12g06795 681 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Seca12g06795 681 Gene3D Ribonuclease Inhibitor 241 385 IPR032675 -
Seca12g06795 681 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Seca12g06795 681 MobiDBLite consensus disorder prediction 400 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06795 Seca-Chr12 159907006 159909051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06795 11 395 Trihelix Transcription Factor Family AT4G18670 73.834 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06795 - - gmx:100814585 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06795 12 159907006 159909051 Seca12g06795 12 159907006 159909051 ECH