Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06793 ATGAGTGATACCTCTTACTCCAGTAATAGGCAGGAGCAGGACAGCTCCTTCTACAAGATACCAACCATCAAGTTTACCAAGCTCTTCATCAATGGAGATTTCGTCGATGCCGTATCAGAAAAATTAAAAAAAACAGGGAAGACATTTGAGACAATAGACCCAAGAACAGGAGAAGTGACTGCAAGTATTAGCGAGGGAGATAAAGAAGACATTGACATTGCTGTTATGGCAGCGCGTGAGGCATTTGATTCAGGTCCATGGCCTCGCATGTCCGGTGTTGAAAGGGCAAAATTTATGATGAAATGGGCAGACTTAATTGATCAAAACAGAGAAGAACTAGCAGCATTAGAGACGATTGATACTGGAAAGCTGTACCATTCCACTATGGTTTTGGAAATTCCTGCAGCCGCAAGTACTCTACGTTACTATGCAGGTGCTGCTGATAAAATTCATGGCGAGGTTTTAAAACCAGCACGGGAGTTTCACGCTTATACACTGTTGGAACCAATTGGTGTTGTGGGACACATAATTCCCTGGAATGCCCCAACCTCCATGTTGTTTACTAAAGTTAGCCCTTCCTTAGCTGTGGGATGCACTATGGTCCTCAAGCCTGCTGAACAAGCACCTCTCTCTGCTTTGTTTTGTGCTCATCTTGCTAAACTGGCTGGAATCCCAAATGGAGTGCTCAATGTAGTACCTGGATTTGGCCCAACTGCTGGTGCAGCAATAAGCTCACATATGGACATAGATGCGGTCAGCTTTACTGGTTCTGTTGAAGTAGGTCGTGAAGTAATGCAAGCTGCAGCTAGGAGTAATTTAAAACCGGTTTCACTTGAATTAGGAGGCAAATCACCTCTCATTATTTTCGATGATGCTGATATAGACAAAGCTGCTGAGCTTGCTCTCTTAGGCATCCTATTTAACAAGGGAGAAGCTTGTGTTGCAAGTTCCCGTGTGTTCGTTCATGAAGGGATCTATGATGAATTTGAGAAGAAGTTGGTGGAGAAGGCAAAAGCTTGGATCGTTGGGGATCCTTTTGATCCTAAAACTCAGCAAGGGCCTCAGGCTTACAGGAACCAATTTGAAAAAATTCTTTCCTATATTGAGCATGGAAAGAGAGAAGGAGCCACTCTCCTGACTGGAGGTAAAACAGTGGGCAGTAAAGGCTACTACATTGAACCAACAATTTTCTCCGATGTAAAGGAGGATATGCTTATAGCACAGGATGAAATATTTGGCCCTGTGATGGCACTGATGAAGTTTAAGACTATTGATGAAGCAATAAAGAGTGCTAACAATACCAAATATGGCCTAGCAGCAGGCATTATGACCAAGAACTTGGATACTGCAAACACTATGTCAAGGTCCATTCGGGCAGGCACTATTTGGATCAATTGCTATTTCGCCTTAGGGAGTGACATTCCTTTTGGAGGCTATAAGATGAGTGGATTTGGAAGAGATTTGGGATTGGAAGCCCTTCACAAGTACTTACAAATTAAATCTGTTGTAACACCTATTTATAATTCTCCTTGGCTGTGA 1539 0.4295 MSDTSYSSNRQEQDSSFYKIPTIKFTKLFINGDFVDAVSEKLKKTGKTFETIDPRTGEVTASISEGDKEDIDIAVMAAREAFDSGPWPRMSGVERAKFMMKWADLIDQNREELAALETIDTGKLYHSTMVLEIPAAASTLRYYAGAADKIHGEVLKPAREFHAYTLLEPIGVVGHIIPWNAPTSMLFTKVSPSLAVGCTMVLKPAEQAPLSALFCAHLAKLAGIPNGVLNVVPGFGPTAGAAISSHMDIDAVSFTGSVEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDKAAELALLGILFNKGEACVASSRVFVHEGIYDEFEKKLVEKAKAWIVGDPFDPKTQQGPQAYRNQFEKILSYIEHGKREGATLLTGGKTVGSKGYYIEPTIFSDVKEDMLIAQDEIFGPVMALMKFKTIDEAIKSANNTKYGLAAGIMTKNLDTANTMSRSIRAGTIWINCYFALGSDIPFGGYKMSGFGRDLGLEALHKYLQIKSVVTPIYNSPWL. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06793 512 FunFam Aldehyde dehydrogenase, putative 474 500 - -
Seca12g06793 512 Pfam Aldehyde dehydrogenase family 44 502 IPR015590 GO:0016491
Seca12g06793 512 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 306 317 IPR016160 GO:0016491
Seca12g06793 512 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 14 502 - -
Seca12g06793 512 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 278 285 IPR029510 GO:0016491
Seca12g06793 512 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 282 471 IPR016163 GO:0016620
Seca12g06793 512 FunFam Aldehyde dehydrogenase3 282 471 - -
Seca12g06793 512 SUPERFAMILY ALDH-like 18 508 IPR016161 GO:0016491
Seca12g06793 512 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 30 500 IPR016162 GO:0016491
Seca12g06793 512 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 30 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06793 Seca-Chr12 159886256 159891826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06793 9 512 Aldehyde Dehydrogenase Gene Family AT3G24503 68.119 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06793 K12355 - gmx:100527654 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06793 12 159886256 159891826 Seca12g06793 12 159886256 159891826 PCT