Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06770 ATGTATAAATCATTTGTGACATGTGATGATCCAAAAGGAGTTGTGCAATGTGGAACTATCAGGAAATACAGGAGGACTTATTCTCAGAAAATGAAGGACAAGATCAAAATCCAGAATACAACTGAAAACTTAGAAACATCCTTGATAAATAGAAGATACAAAGAAGGCAAGATCCTAAAAGGATCCAGTGAAAACCTCACTGATCCATCATTTCTGCACCCCATACAGGTCTCTAGAGGGGACCAAAGTTTGAACAACATGATTGATTCATGGTCTAGCAATCTTATGTATGATGGAAGGTCTAAAGATACTGCAAAAAGTTTGTTAAAAGGAGTTCTTAATATGCAAGATTCTCTAATCATGCTTGGCAAGTTGCAAGAGGCTTCACAACATACAGCTCGTTTCAAGAGAAAACATACTGAGAAACCTAAAAGAGATAAGATTGATGCAAAGATGATTGGTAGAATTCATGCCAATCAATTTAGTGAACAAAGTAATCCAAAGAGATTTCAAAAAGCTCAGCCTTCTGCTGATGGTTCTTCAAGTAATTTAATTAAGGAGAGTTTGATTAGGCAAAATATGTTTCCAAGCACAACTCCTTCTATAAGCCCAAGCCAATCTTCTGGGGTTATCACTCACAGGTTTGCTGGTCCTTCTTTCTCACTAACACCTTCAAAAGGACCCAATCTAGTTGCCAAGTTGATGGGTTTAGAAGAAGTCCCCTCAAAATCATTTCCTGCTATAAAGCAGAAACCTTTGGATGGTGAAAAGATTATGCTGAAGGTTAAAAGGAATAAATATAGAGCTGAGAAGGTTAATCAAGAACAAAAGGTCCTGAGAGAAACTTTTGACACTGTGCATCTCAAAGGACAGAATTTTGTCAAAGAGCCAAAGCTTCTGGTCCATCATTTCAGTGATCCCAATTCCAAGCAGTTTGATAATTTATCTCACATTGTACTCATGAAGCCTCAATGTACTTCATACCAGGAATCAGTAAAAACACATACCCCAGTTCCTCCTGAAGAGTTATCCATTAGAAAACTGAGAGAAGAAATAATCTCTTCCAAAACTATCAGACAAAGAAAAGGTTCTAGTTCCACCAACATGGGAAAAGAAATGGAAAAAGATGTAAGGAGACGGCTTACCAAAGAGAAAAGACCTGAATTTCTCAAAGAGGTTGTGAAACTGGATGCAAAAGAAAAATCTTCTGGTAAGGTAAAACTATATAGTCAGGTTAGTCACACATCACAGGCAAATGAGACAATTGATAAAAAATGTAAGGTACAGATCATTAGTAGAAAACTGCCAGAAAAGGATATCTCAGTGCCTAGAATTGTGGCAATACCTCAAGATCAAAGAGAAATCACCTCCACAAAATTGAGGAAGCCACCAAGTTGGTCCAGAATCGACAAAAATGAGATTTCCTTCCTAGAGAGCACAGATTCAAACACAATCTCCATCTCTAAAACAGAGTCACAAAAAATTACTAATTCCAAGGACCTTAGTATGGAGATTAAAGAATCTGATTCTGTGCTAACACGTAGAAAGAATCAGATGAAGAACCAAACTCCCAGTGCTGAGCCTGAAGCAGCTAAATCAATTGTTGAACAAATGGGGCTTGGAAAAGAGAAGAAAAGTATAGATGTTCCTGCTAAGGATGATTCTGCAGAGATTAGAATCACCACTGTACAAGCAGGTGAACTCATGATGAGGCGTGAAGCACATGCCTATGAAAATAAGAATAGAGGATGTAAGAGGAGAAAGAGTTCTTCAGGCAATGACACTATGCTGCTAAAGTCTGAACATGAAAATGATTCTATCTTTGTTAAAGAAGCTCCTGATAGCATTCCTGACAAAGAGGGAGATAAGCTAAAACATTTTCTTTTAACCAGTGAATCATTTATTGGACATGCAGAGAAGCTCTTCAATCTTGATGTGGATTGTCCTAAGATCCTACAAAAAAATGAAACTAAAGGGATAGACAATCTCAGGCTTTATTTGGAATGTGCAAATGAACTTAGTGAGTGTAAAAGCCTTCAAGAGTCACAGGTAGTGCGTTCTTTGTTGTTAACTTGTGTGGGAAACTCAAGATTACTTGTCTCTTTAAGAAGGCTGGTTGAAGAAATCTATGATGCCATTGAGAATCTGAAATTTTATAGTGAGAGTTGTGGGGAGAAACCTTTCACAGACAATCTCTTTGCAATGACAGAGAGAGATATGATGTGCAATGGACTGGTAAATGGTATATGGGAGTGGGGTTGGAGACACGGATTTTCTGAAGATGAGACTGAGCTAGTTGTAAATAAAGTAGAGAGCTTGCTTGTAAGTGAATTAATTGAGGACGTTATTATAAATTTATGA 2361 0.3744 MYKSFVTCDDPKGVVQCGTIRKYRRTYSQKMKDKIKIQNTTENLETSLINRRYKEGKILKGSSENLTDPSFLHPIQVSRGDQSLNNMIDSWSSNLMYDGRSKDTAKSLLKGVLNMQDSLIMLGKLQEASQHTARFKRKHTEKPKRDKIDAKMIGRIHANQFSEQSNPKRFQKAQPSADGSSSNLIKESLIRQNMFPSTTPSISPSQSSGVITHRFAGPSFSLTPSKGPNLVAKLMGLEEVPSKSFPAIKQKPLDGEKIMLKVKRNKYRAEKVNQEQKVLRETFDTVHLKGQNFVKEPKLLVHHFSDPNSKQFDNLSHIVLMKPQCTSYQESVKTHTPVPPEELSIRKLREEIISSKTIRQRKGSSSTNMGKEMEKDVRRRLTKEKRPEFLKEVVKLDAKEKSSGKVKLYSQVSHTSQANETIDKKCKVQIISRKLPEKDISVPRIVAIPQDQREITSTKLRKPPSWSRIDKNEISFLESTDSNTISISKTESQKITNSKDLSMEIKESDSVLTRRKNQMKNQTPSAEPEAAKSIVEQMGLGKEKKSIDVPAKDDSAEIRITTVQAGELMMRREAHAYENKNRGCKRRKSSSGNDTMLLKSEHENDSIFVKEAPDSIPDKEGDKLKHFLLTSESFIGHAEKLFNLDVDCPKILQKNETKGIDNLRLYLECANELSECKSLQESQVVRSLLLTCVGNSRLLVSLRRLVEEIYDAIENLKFYSESCGEKPFTDNLFAMTERDMMCNGLVNGIWEWGWRHGFSEDETELVVNKVESLLVSELIEDVIINL. 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06770 786 PANTHER OS01G0228800 PROTEIN-RELATED 1 785 - -
Seca12g06770 786 MobiDBLite consensus disorder prediction 511 530 - -
Seca12g06770 786 MobiDBLite consensus disorder prediction 357 379 - -
Seca12g06770 786 Pfam DUF761-associated sequence motif 226 245 IPR032795 -
Seca12g06770 786 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06770 Seca-Chr12 159706206 159710453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06770 1 238 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 27.239 2.83e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06770 - - var:108346558 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06770 12 159706206 159710453 Seca12g06770 12 159706206 159710453 ECH
Seca12g06770 12 159706206 159710453 Seca10g03352 10 50878448 50882705 PCT