Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06766 ATGGGGGAAGGTGAGGGGGGTGATTTCCCTCCCAAGAATGCATCGTCGGAGGGTGTTGCAACAGTGCTGCCATCGAAGAAGCTTGCCAGGCAGCTTGATTTCACCGGCTTTGGTGGGATTCCGGCAGGTTCGCCTTTGTCGGAACACCCGCAGCCACCGACACTGCCGCCGCCGCCTCCTCTTTCAGTCAGGGCTGTGAAACCAGAATCTCCAAAATCAAGATCAAGACCCAACTTTGAAATGAAAGATGGTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACATTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAATTGTGTAAATTGTTATAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACCCTAGAACGCAATCCAAATGCTTTTAGGCCAAAAATTGCGAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGAGGCTGGGGAAATTTTAATATTGGGAAAGCACAACAAGGGTTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAATATTCTTTGTTCTGAAAACTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAAGCTTTATTCCATGGAGATCAAAATAACAACATGGCATATATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTGTTGGTTCATCTGGTTATTCATCACCGCCAGTATCAAGAAAAAGAAAAGGTCCAGAACACTTCTTTGGGCCGACTGTGAAGGATCCAACTGTTGGCAGACTGGGACAACAGGCAAACCATGTCAGAGGTCCTGCTCCCTCCTCATCCTTGTCTCCTATCCCAGGTGCTCGTGTTGGACCTGCATCATTAGGACCTTCAAAATTTATGTACAGGTCTCTTTTAGCTGACATAATACAACCACAGCACCTGAAGGAGCTTTGCTCAGTTCTGGTGCTTGTATCTGGACAAGCTGCTAAGACACTTACAGACCAGAAAAATTTATTGGATAAGCACACAGAGGATCAGACGGAAACTTCTCTTGCTTCAACTCAAGAGAAATTACCAAGCCAAAAAGAAGCTGATGTTGAGAAAGCTATGGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCTGATAATTCCAATTCAGACGGTGCTGATGTCCCAAAAGGAAGACCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATACAATGTTCATGACTGCTGCCTCCCCTATTGGACCAATGACCCATGCTTGCAACACTTCTGCGCAACCGCCTTATGGACAAGGAATGACACAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACAAAATTTAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAACGAGACAAAGTGTTCTTCATTAGCAAGAAGTGAGTTAGAGAGTCAAAAGGACCCGATCATCAATGGCACTGGAAATGCCAGTACCGAGGCAGCCCATCAGCAGGGAACCATTATTAATGGTGTTGCCAAAGTTGGCAACACCATTTCAACACCTTTGGTCCCTAGTAGTCTTATTCCTGAAAATGGGGAAATTAAGCTGAAGGTTGAAAAATAG 1662 0.4434 MGEGEGGDFPPKNASSEGVATVLPSKKLARQLDFTGFGGIPAGSPLSEHPQPPTLPPPPPLSVRAVKPESPKSRSRPNFEMKDGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAYIQQAANAAITGAVGSSGYSSPPVSRKRKGPEHFFGPTVKDPTVGRLGQQANHVRGPAPSSSLSPIPGARVGPASLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKNLLDKHTEDQTETSLASTQEKLPSQKEADVEKAMADDCSSANQTDKISPDNSNSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPIGPMTHACNTSAQPPYGQGMTQVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPIINGTGNASTEAAHQQGTIINGVAKVGNTISTPLVPSSLIPENGEIKLKVEK. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06766 553 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g06766 553 MobiDBLite consensus disorder prediction 69 90 - -
Seca12g06766 553 SMART CXC_2 172 213 IPR033467 -
Seca12g06766 553 SMART CXC_2 87 127 IPR033467 -
Seca12g06766 553 MobiDBLite consensus disorder prediction 384 402 - -
Seca12g06766 553 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 89 124 IPR005172 -
Seca12g06766 553 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 175 209 IPR005172 -
Seca12g06766 553 Coils Coil 122 142 - -
Seca12g06766 553 ProSiteProfiles CRC domain profile. 88 212 IPR005172 -
Seca12g06766 553 MobiDBLite consensus disorder prediction 246 300 - -
Seca12g06766 553 PANTHER TESMIN/TSO1-RELATED 53 482 IPR028307 -
Seca12g06766 553 MobiDBLite consensus disorder prediction 46 65 - -
Seca12g06766 553 MobiDBLite consensus disorder prediction 34 91 - -
Seca12g06766 553 MobiDBLite consensus disorder prediction 351 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06766 Seca-Chr12 159684667 159690424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06766 1 527 CPP Transcription Factor Family AT4G29000 56.228 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca12g06766 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06766 - - gmx:100786353 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06766 12 159684667 159690424 Seca12g06766 12 159684667 159690424 ECH