Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06762 ATGGCAGACTACGATAACCCGCCGCCTGGAAGTGGGAAACATACACCTCCCAAAGACTTTGTCTGCCCAATAACTAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACTTGTCCTATAACTCGCCAGAAGCTGCAAAACACCCAGCTACCTAAGACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACGCAACCCCAATTCAGTCCCGCCACCATGTGAGAGTCCATACGAAGATACCGAGGCAGTAGTGAACACAACAATGCCTTCAACTTCTCCTAATAGTGTAATAACACAAGCCACCTTTGATGGGGTGATTAGTGAGTTACGCCATGCAATCAATAACCTGTATATGTCAGAGATTCTCGAGGAATCTGAAATGGCAGTGCTTCAAATTGAGAAATTGTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGTATGCTATCAAAACCTCCGATAATTAATGGGTTTGTGGAGATCCTTTTGAATTCTGTTGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGCTCTAGAGACAATGCTGTTATTCAGACTCTTACACGTGTGGATACTGACGTGGAATGTATCATGGCTCTTTTCAAGCAGGGATTGACAGAGGCTGTTGTTCTGTTGTATCTCCTAAACCCTTCCACTGTGACTCTTACAGAGATGGCCATAGTGGAGTCTCTCATAAGAGTTTTTGATAGGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTGGCACAGATTATTGGAAGCAGTGAAGAGATGATTGCATCTTTGGTTGTCAAGACTCTTTTCTCTGAAAAAGCAATTGGAACCATTGTCAGCAGCTTGGGAGCTGAGTGGGCAGAGGAGAGAATTGCTGCAGTGGAGATCTTATTGAGATGCATGGAAGAGGATGGAACTTGCAGGAACATCATTGCTGATAAAGCAGAGCTTTCCCCTATTTTGGAAAGCTTCATCGCTGCAACTGATGGAGAGCGTTTTAAGATTGTTAAATTTTTTTCTGAGTTAATCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATCAAGGAAGAAGGACATTTTAGTACAATGCATACTCTCCTTATTCATTTGCAGACAGCCCTTCAAGATGAATGCCCAGTCATGGCCGGCCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTTCGAAACACAGATTTCCCCGCTACCCAATTAGCAGCTGCTGATACAATCATGTCACTGCAAGGGAGGTTCAACTTCACTGGAAAGCCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTACAGGTGGATAAGATCAACAACTTCTGCCCAGATCAACAAGTTCCAGAAGAAGAAAAGGCAGCTGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGTATAATTTTTGAAGCTTTAGCAGATGGCATGAAGAGCAGATATCCAGAACTACGTTCAGCATGCTTTATATCAGCTACGTGGCTCACATATATGTTGACCATTCTACCAGACACAGGGATACAAGGAGCAGCCCGTGTCTGCTTGCTAAAGCAGTTCATAACTAAATTAAATTCTGCTAGGGACGTTGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCCTACCTGATCTAACTTCCTACACTAAAGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATCCTCTCCTTTGGCATCCGAAATGCTAAAAGTTCTGGTTAATGAGAATGAATCTAAAGCAGACATTTGGATACATAAAGAGCTAATTCAAGTAGACTGCAGAGAGAATGGAGAAGTGCTGTCCGTCATTTGCTCTAAGGATAAAATATTTTCAGGCCATACAGATGGCAGTATTAAGGTTTGGACATTAAAGAATGGCTCATTCCATCTGTTGCAAGAGATCCAAGAACATTCGAAGGCTGTGACAAACTTGGTGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGACCGAACTACAAAGGTCTGGTCTATTGGAGGGGCTGCAGTACATTGTTTACAGGTGCATGATATGAAGGACCAAATTCATAATTTAGTTGTAACCAATAGCATAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCACTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAATAAATATGTGAAATGCTTGGCTCATGCTAATGGGAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGTCACTGGTACAGTCAGTACTATTCAAAGTGGTTCTAAAAAATTACTTGGGAAAGCATATCCTATTTATGCACTACAAATTCACGGTGAACTTATATACGCAGCTGGCTCTTCCTTGGATGGATCTGCTGTAAAGATATGGAACAATTCCAATCACAGTATGGTTGGATCACTGCAAACTGGATCGGAAGTACGAGCTATGGCAGTGAGCTCAGAATTAATTTATTTGGGGTGCAAAGGTGGTGCTGTAGAAATTTGGGATAAGAAGAAACACGGAAGAGTTAACACGTTACAAGTGGGTACGCAGTGTAGGGTTACTTGCATGGCTCTAGACGGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGAAATGAATTAA 2868 0.4177 MADYDNPPPGSGKHTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKERNPNSVPPPCESPYEDTEAVVNTTMPSTSPNSVITQATFDGVISELRHAINNLYMSEILEESEMAVLQIEKLWRGVNLGVDIHSMLSKPPIINGFVEILLNSVEPQVLQAAVFLLAEMGSRDNAVIQTLTRVDTDVECIMALFKQGLTEAVVLLYLLNPSTVTLTEMAIVESLIRVFDRKEEDLVKMCLKPKTAAVLLLAQIIGSSEEMIASLVVKTLFSEKAIGTIVSSLGAEWAEERIAAVEILLRCMEEDGTCRNIIADKAELSPILESFIAATDGERFKIVKFFSELIKLNRRTFNEQILHIIKEEGHFSTMHTLLIHLQTALQDECPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPATQLAAADTIMSLQGRFNFTGKPLTREVLLKRAGIDKSSRSLVQVDKINNFCPDQQVPEEEKAADDWERKIASVLVSHEFGIIFEALADGMKSRYPELRSACFISATWLTYMLTILPDTGIQGAARVCLLKQFITKLNSARDVEDRILSMLALNSFLHFSDGLPDLTSYTKDILKGLRELKRSSPLASEMLKVLVNENESKADIWIHKELIQVDCRENGEVLSVICSKDKIFSGHTDGSIKVWTLKNGSFHLLQEIQEHSKAVTNLVISESGDRLYSGSLDRTTKVWSIGGAAVHCLQVHDMKDQIHNLVVTNSIACFIPQGTGVKVHSLNGESKLLNSNKYVKCLAHANGRLYCGCHDSSVQEIHLVTGTVSTIQSGSKKLLGKAYPIYALQIHGELIYAAGSSLDGSAVKIWNNSNHSMVGSLQTGSEVRAMAVSSELIYLGCKGGAVEIWDKKKHGRVNTLQVGTQCRVTCMALDGNEEILVIGTSDGQIQAWEMN. 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06762 955 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 92 IPR013083 -
Seca12g06762 955 SUPERFAMILY WD40 repeat-like 683 954 IPR036322 GO:0005515
Seca12g06762 955 Gene3D - 771 955 IPR015943 GO:0005515
Seca12g06762 955 Gene3D - 659 770 IPR015943 GO:0005515
Seca12g06762 955 Gene3D - 161 470 IPR011989 -
Seca12g06762 955 CDD RING-Ubox_PUB 17 69 IPR045210 -
Seca12g06762 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 712 745 IPR001680 GO:0005515
Seca12g06762 955 SMART WD40_4 874 910 IPR001680 GO:0005515
Seca12g06762 955 SMART WD40_4 663 700 IPR001680 GO:0005515
Seca12g06762 955 SMART WD40_4 913 953 IPR001680 GO:0005515
Seca12g06762 955 SMART WD40_4 705 744 IPR001680 GO:0005515
Seca12g06762 955 SMART WD40_4 779 822 IPR001680 GO:0005515
Seca12g06762 955 SMART WD40_4 825 871 IPR001680 GO:0005515
Seca12g06762 955 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 954 - -
Seca12g06762 955 SMART Ubox_2 19 83 IPR003613 GO:0004842|GO:0016567
Seca12g06762 955 ProSiteProfiles U-box domain profile. 15 90 IPR003613 GO:0004842|GO:0016567
Seca12g06762 955 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 712 745 - -
Seca12g06762 955 Pfam WD domain, G-beta repeat 709 744 IPR001680 GO:0005515
Seca12g06762 955 SUPERFAMILY ARM repeat 173 635 IPR016024 -
Seca12g06762 955 ProSitePatterns Trp-Asp (WD) repeats signature. 940 954 IPR019775 -
Seca12g06762 955 ProSiteProfiles Trp-Asp (WD) repeats profile. 921 955 IPR001680 GO:0005515
Seca12g06762 955 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 921 955 - -
Seca12g06762 955 SUPERFAMILY RING/U-box 13 93 - -
Seca12g06762 955 Pfam U-box domain 17 87 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06762 Seca-Chr12 159646342 159653629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06762 11 83 U-box Gene Family AT1G23030 53.425 9.37e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06762 - - gmx:100808867 1613.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06762 12 159646342 159653629 Seca12g06762 12 159646342 159653629 ECH