Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06761 ATGAATAGAGGTGTCCTTCAAAGCTCACCGGTGCAACAAATTATGATGGCCGGTAACCCTAACAATTGGTGGAACATGCGCCCTCCTCCTTCTTCTCCTAACAACTTCTCTTCCAATTTTCTAACACATCCTCCATATGCTCCTCCTCCTTCTTCTCTTCCTTTTCCTTCTTGGCATGAAAATCAAGATCAGCTTCCAGCAGAGTCATGGAGCCACCTACTCATAAATATATATATATATATATATAGGAGTGGAGTGGTGTCTGAAGAAGAAAAGGCAGGTATGTGTAAGAACTGGGAGGAACAAATGCTAATTATTAGTGATCAGTCTCCTCTTGTTGATGTTAAGCAAGAAATTAAAAGCTGTGTATATGGACATGGTGGTGGTGGAAATCAAGAATTTCAGGGGTCTCTTCCTCCTGCTGCTAATTCTTCCTCCAACAACTCATCATCATCATCATGTGTTACAAGCAGCAGCGTGTTGGATTTCTCTAACAATAAAACCGAAACCAGGCCTTCTCCATCAGATCTATCTTCTGAGTGCAATAGCAGTAGTGGAGGTGGTGGGGCATTGAAGAAAGCTAGGGTTCAACCGTCTACAACCCAGTCCACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCATTCGGGAAGACTGACACAGCATCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTCAGAGTCAAATTGAGGTCTTCTCCTCTGTCTCTTGTTTTTCTTTTTTCCAAACAAACCACGACTCATCAGAAAATAGTGATGGCACACTTCAGGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCATCAACAATCTGTTCAAGGAGAGAAGAATAGTATATTCCCTGAAGACCCCGGTCAGCTGCTGAATGAAAACAGTTTGAAGAGGAAAGCAGCTAGTGAGCAGGATTGTGAAGAAGAAGAGAAGAAGGACCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGAAGTGACAATGGAGCTGACTATTGGGCCCCTGCTTTTGGAGGAGCATTTCGGTAG 1110 0.4387 MNRGVLQSSPVQQIMMAGNPNNWWNMRPPPSSPNNFSSNFLTHPPYAPPPSSLPFPSWHENQDQLPAESWSHLLINIYIYIYRSGVVSEEEKAGMCKNWEEQMLIISDQSPLVDVKQEIKSCVYGHGGGGNQEFQGSLPPAANSSSNNSSSSSCVTSSSVLDFSNNKTETRPSPSDLSSECNSSSGGGGALKKARVQPSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEVFSSVSCFSFFQTNHDSSENSDGTLQALSLPYLGSGSGNMRHQQSVQGEKNSIFPEDPGQLLNENSLKRKAASEQDCEEEEKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGAFR. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06761 369 Gene3D - 202 256 IPR036638 GO:0046983
Seca12g06761 369 MobiDBLite consensus disorder prediction 136 150 - -
Seca12g06761 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Seca12g06761 369 MobiDBLite consensus disorder prediction 163 207 - -
Seca12g06761 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 254 IPR036638 GO:0046983
Seca12g06761 369 CDD bHLH_AtbHLH_like 204 250 IPR045239 -
Seca12g06761 369 MobiDBLite consensus disorder prediction 163 186 - -
Seca12g06761 369 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 74 351 - -
Seca12g06761 369 MobiDBLite consensus disorder prediction 131 150 - -
Seca12g06761 369 Coils Coil 313 338 - -
Seca12g06761 369 MobiDBLite consensus disorder prediction 288 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06761 Seca-Chr12 159632621 159636199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06761 1 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 41.117 9.17e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06761 - - gsj:114421158 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06761 12 159632621 159636199 Seca12g06761 12 159632621 159636199 ECH
Seca12g06761 12 159632621 159636199 Seca12g06761 12 159632621 159636199 PCT