Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06756 ATGTCTGTGCCATTGGAACACGGGTATGGTGGCTTGGCAGAGGTTCCTTCAATGGAAAGCTCTGACAAGTTTACACAGAGGACAAGCATTGGGTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTGCCAGGGTCTGAGTCACCAGAGAGGGATGGTGTGGAGGACAAGAATGGATTCTCAGCCCCACTAGGCATGCTCAAGAGTTTGGTGTCTGGGGCCAAGAGGGGTTTCTCGGACGCCATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTTTGGGTAAAGATGGAAGCTTGTTCTCTCCCAGGGGTGGTAGTAGTGCTGCCAACTCTCTGGCTCTCGCTGCGCCTGACTGCACCAACCAACAAACGCCTTTGGCTGCCAAAGAAAGTGTTTCACAGTCTCCAAAGCCATTGCATGAGAAGAAACCCCAGATTTCTGCTCCTGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCTATGGCTACTCAGGCTCAGAAGAATGATGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTGAAAGTCAGCATGGAAGGTGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTAGCACTTACAGGGAACTTTCTTCAGCACTTGAGAAGATGTTTAGTTGTTTTACCATCAGTCAATGTGGCTCTTATGGGGTTTCTAATCGAGAAAATTTAACTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCATTGACTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 945 0.4825 MSVPLEHGYGGLAEVPSMESSDKFTQRTSIGLNLKATELRLGLPGSESPERDGVEDKNGFSAPLGMLKSLVSGAKRGFSDAIDGGSGKWVLSGNGGSEVGLGKDGSLFSPRGGSSAANSLALAAPDCTNQQTPLAAKESVSQSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMATQAQKNDADAEAKSGCLYVKVSMEGAPYLRKVDLNSFSTYRELSSALEKMFSCFTISQCGSYGVSNRENLTESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAMEKCKSRN. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06756 314 MobiDBLite consensus disorder prediction 131 158 - -
Seca12g06756 314 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g06756 314 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 301 IPR003311 GO:0005634|GO:0006355
Seca12g06756 314 FunFam Auxin-responsive protein 189 306 - -
Seca12g06756 314 MobiDBLite consensus disorder prediction 41 60 - -
Seca12g06756 314 Gene3D - 188 307 - -
Seca12g06756 314 ProSiteProfiles PB1 domain profile. 194 296 IPR000270 GO:0005515
Seca12g06756 314 Pfam AUX/IAA family 37 305 IPR033389 -
Seca12g06756 314 SUPERFAMILY CAD & PB1 domains 191 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06756 Seca-Chr12 159557018 159560348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06756 99 299 B3 DNA Binding Superfamily AT3G61830 28.571 2.13e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca12g06756 AUX_IAA 2.5e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06756 K14484 - gmx:100803754 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06756 12 159557018 159560348 Seca12g06756 12 159557018 159560348 ECH
Seca12g06756 12 159557018 159560348 Seca12g06756 12 159557018 159560348 PCT