Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06752 ATGGAACGCATCGTAGGCGGCAAATATAAGCTTGGCCGCAAGATCGGAAGTGGATCTTTCGGCGAAATCTACCTCGCTACGCATATTGATACCTTCGAAATCGTCGCCGTCAAGATCGAGAATAATAAAACAAAGCACCCGCAACTGCTATATGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCGAGCATAAAATGGGCTGGCACAGACGGGGAGGATAATGTGCTTGTTCTTGATTTGCTGGGGCCCAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCCTTAAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACATAGGGATATCAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATCGGGATCCCACAACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTATTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAGCAGAAGTATGATAAAATTTGTCAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCCTTGACATTTGATCAGCGACCTGACTATGGATTCTTGAAGCGCCTGTTTCGGGACCTATTTGCTCGAGAAGGTTATGAATTTGATTATGTTTTTGATTGGACCATTTTAAAGTATCAGCAGTCGCAAAAGAATATAGTGCAGCCTCCCTTATCTACAATATTAAATTTTGCCTTATCACAGCCAGTTCCTGGAGCAAGTAATAGTCGTGCAATTCCGATGGATGTTGACAACCATCAAGGGCATGTCAAAGAGCGCATTAGATCTGGCAATGCTACTGGTGGTGGTGTTAAAATTCAGTTTAAATCACCAGTTGGTAAAAATTTGAGTTCTGAAAGTCCTCTTGACAAAAATAATTTTGGAGAAGCAAATATGCCCTCTACTTCATACTCTCCCGCTGGTACTTCAAAAAGGAACTCCTTGAGGCCTTCCTTGTCTGCTGAAGCTTCCAACCCTGGACATGGCCAAGGCAGTAAAGTTGGCCCTTCAAGTAGCTGGATGTCATCCCTGCAACACATGTCTTCTGCCAAATGA 1302 0.4247 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENNKTKHPQLLYEAKLYNILQGGSGIPSIKWAGTDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDPTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQSQKNIVQPPLSTILNFALSQPVPGASNSRAIPMDVDNHQGHVKERIRSGNATGGGVKIQFKSPVGKNLSSESPLDKNNFGEANMPSTSYSPAGTSKRNSLRPSLSAEASNPGHGQGSKVGPSSSWMSSLQHMSSAK. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06752 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca12g06752 433 MobiDBLite consensus disorder prediction 343 433 - -
Seca12g06752 433 FunFam Casein kinase I isoform delta-like 1 349 - -
Seca12g06752 433 CDD STKc_CK1_delta_epsilon 8 282 - -
Seca12g06752 433 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06752 433 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06752 433 MobiDBLite consensus disorder prediction 360 433 - -
Seca12g06752 433 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Seca12g06752 433 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca12g06752 433 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06752 433 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Seca12g06752 433 PANTHER CASEIN KINASE-RELATED 7 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06752 Seca-Chr12 159515595 159520551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06752 9 234 EF-hand Containing Proteins AT4G23650 29.310 2.52e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca12g06752 Pkinase 4.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06752 K08960 - gmx:100779936 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06752 12 159515595 159520551 Seca12g06752 12 159515595 159520551 ECH
Seca12g06752 12 159515595 159520551 Seca12g06752 12 159515595 159520551 PCT