Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06735 ATGGGTGAGCTACCTAGCTCTGAGATAGACACTACCGTTACCGTTACCATTACCATTACCACTCCTACTAATAAAACTCCTAATCCTAAACCTTCATCATCGGGGCCCAACTTACCCGACCCGGATGAAAAAAGGCCCAAACGGCCCAGAGATAGCAACAGCAAACACCCCGTTTATAGAGGGGTTCGAATGCGGGCCTGGGGCAAGTGGGTATCTGAAATCCGCGAGCCCCGCAAGAAGAACCGGATCTGGCTCGGTACCTTCGCTACGCCGGAGATGGCAGCGCGTGCTCATGACGTGGCGGCGCTCGCTATTAAGGGAAACTCCGCCATCCTCAACTTCCCTGAACTTGCCGCTTCAATGCCCCGACCTGTCTCCAACTCGCCACGGGATGTTCAAGCCGCTGCCGCTAAAGCTGCTGCCATGACGTCGCATTTCTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCATTATCATCGCTGTCGCAGTCTTCGTCTTCTTCATCATTGGCGGCGTCATCGTCTGGCGACCCGTCGACGCCGGAGGAGCTGGGTGAGATAGTGGAACTGCCAGCTTTGGGAACGAGTTTTGAAATACCCGACCCGAGTAGCGAGTTCGTGTTTTCCGACCCGGTGGATGGGTGGCCTTATTCTCACCCTTGGTATCATAGCATTTATGATGAGAGGGATTGTGAAGGGTATTTTATTGGGGATCAGATTTCGATGCAAGACTCTGAAAGTGTGATTCTTTGTGGCTTTGAGGGTTCATTGTGGCAGCATTAA 786 0.5216 MGELPSSEIDTTVTVTITITTPTNKTPNPKPSSSGPNLPDPDEKRPKRPRDSNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGNSAILNFPELAASMPRPVSNSPRDVQAAAAKAAAMTSHFSSSSSSSSSSSSLSSLSQSSSSSSLAASSSGDPSTPEELGEIVELPALGTSFEIPDPSSEFVFSDPVDGWPYSHPWYHSIYDERDCEGYFIGDQISMQDSESVILCGFEGSLWQH. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06735 261 MobiDBLite consensus disorder prediction 40 58 - -
Seca12g06735 261 MobiDBLite consensus disorder prediction 17 31 - -
Seca12g06735 261 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Seca12g06735 261 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Seca12g06735 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 41 196 - -
Seca12g06735 261 MobiDBLite consensus disorder prediction 17 59 - -
Seca12g06735 261 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Seca12g06735 261 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Seca12g06735 261 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Seca12g06735 261 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Seca12g06735 261 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Seca12g06735 261 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Seca12g06735 261 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06735 Seca-Chr12 159380262 159381068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06735 43 228 AP2-EREBP Transcription Factor Family AT5G11590 63.830 8.27e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g06735 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06735 K09286 - gmx:100778201 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06735 12 159380262 159381068 Seca12g06735 12 159380262 159381068 ECH
Seca12g06735 12 159380262 159381068 Seca12g06735 12 159380262 159381068 PCT