Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06728 ATGGGAAGACATTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAACATGGTCATGGATGTTGGAGCTCAGTTCCAAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGATTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCTCAGCAGGAAGAGGATTCCATAATTGGACTTCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACTGACAATGAGATTAAAAATCTCTGGAATTCTTGCCTCAAGAAGAGGCTTAGACAAAGAGGCATTGACCCAAACACCCACCAACCACTCTCTGAGGTTGAGAAAGACAAGGACAAACCACTCACAGCTGACAAAAGCAACAATCTGCAGAAAGGATCCAATGAGGTGAGTCTTGTTGAGCCACCAAAACCAAAGCCAAATCCTCCTATGCCTATGGAAAGATACCCCCTTGAAATCTCTTCTACCTAA 546 0.4542 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEDSIIGLHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQRGIDPNTHQPLSEVEKDKDKPLTADKSNNLQKGSNEVSLVEPPKPKPNPPMPMERYPLEISST. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06728 181 FunFam MYB transcription factor 68 140 - -
Seca12g06728 181 FunFam Myb transcription factor 11 67 - -
Seca12g06728 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca12g06728 181 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca12g06728 181 MobiDBLite consensus disorder prediction 128 143 - -
Seca12g06728 181 PANTHER MYB DOMAIN PROTEIN 55 1 155 - -
Seca12g06728 181 MobiDBLite consensus disorder prediction 119 181 - -
Seca12g06728 181 CDD SANT 17 61 IPR001005 -
Seca12g06728 181 SMART sant 13 63 IPR001005 -
Seca12g06728 181 SMART sant 66 114 IPR001005 -
Seca12g06728 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca12g06728 181 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca12g06728 181 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca12g06728 181 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca12g06728 181 Gene3D - 69 148 - -
Seca12g06728 181 Gene3D - 11 67 - -
Seca12g06728 181 CDD SANT 69 109 IPR001005 -
Seca12g06728 181 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06728 Seca-Chr12 159336285 159337214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06728 1 156 MYB Transcription Factor Family AT1G09540 80.380 2.25e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g06728 Myb_DNA-binding 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06728 K09422 - gmx:100788976 333.954