Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06721 ATGGAGAGCACTCTTAAGGCCTTGAGAGATGGAGAGTCAGTGCTGGACCTCAGCCCAAGATCCACCGTCAGTGGTGGCGTTGAGGATGTCTATGGTGAGGATCGCGCCACCGAGGACCAGCTTGTCACCCCTTGGACTTTCTCTGTTGCCAGTGGATACTCTTTGCTGAGGGATCCACAGTACAACAAAGGGCTTGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGCCTCCTGCCCCCCACAATTAGCACCCAGCAACTTCAGGAGAAGAAAATGATGAACAACATCCGACAATATCAGGTTCCCTTGCAAAAGTATATGGCCATGATGGACCTTCAGGCAGGCATTTCAATTCATCAATCTGGTCTACAGGAAAGGAACGAAAGGCTGTTTTACAAACTTCTCATTGATAATGTTGAGGAATTGCTCCCAGTTGTATATACTCCTACTGTTGGTGAGGCTTGCCAAAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATCAGTTTGAAAGAGAAGGGGAAAATCCTTGAGGTATTAAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTGTAACTGATGGTGAGCGGATTTTGGGACTTGGGGATCTTGGATGCCAGGGAATGGGAATTCCTGTTGGTAAATTGGCTTTATACACAGCACTAGGAGGAGTTCGTCCTTCATCTTGTTTACCTATTACGATTGATGTGGGGACAAATAATGAGCAATTACTGAATGATGAATTTTACATTGGGCTTAGACAAAAAAGGGCAACTGGACAGGAATATTATGAACTTCTTCATGAGTTCATGACTGCAGTGAAGCAAAACTATGGGGAAAAAGTTCTTATACAGGTTATTGAAAGTTCCATGCATGGTTTTGAAGATTTTGCAAATCACAATGCTTTTGAGTTGCTTGCAAAATATGGTACAACTCATCTTGTTTTCAATGATGATATACAGGGAACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCCTGAAGCTCATTGGTGGTACTCTGGCTGATCACACATTCCTCTTCCTTGGTGCTGGAGAAGCCGGAACTGGTATAGCAGAGCTAATAGCTCTTGAGATGTCGAAGCAGACTAAGTCACCTATAGAAGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTAATTGTTAATTCACGGGCGAATTCACTCCAACACTTCAAGAAGCCTTGGGCTCATGAACATGAGCCTGTTAGCAGTCTCATAGATGCCGTTAAGGCAATCAAGCCTACAGTTTTGATTGGATCATCAGGAGTGGGAAAAACATTTACAAAAGAAGTAGTTGAGGCTATGACTTCAAACAATGAGAAACCTCTTATTATGGCTCTCTCCAACCCGACCTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAGTGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGAAGTCCATTTGATCCTGTTGAACACAAGGGCAAAGTTTATTTTTCGGGCCAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCAATCCGAGTACATGACGATATGCTTCTAGCAGCTTCGGAGGCCTTGGCTAAACAAGTGACAGAGGAGAACTACAAAAAGGGGTTGATTTACCCACCGTTCTCTGATATCAGAAAAATTTCAGCTAATATAGCAGCAAGTGTTGCTGCCAAGGCATACGAACTAGGCTTGGCTACACGTCTTCCTCGTCCGGAGAATCTTGTTAAGTATGCTGAGAGCTGCATGTATACCCCTCTATACCGCAACTATAGGTGA 1833 0.443 MESTLKALRDGESVLDLSPRSTVSGGVEDVYGEDRATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTISTQQLQEKKMMNNIRQYQVPLQKYMAMMDLQAGISIHQSGLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSSCLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYYELLHEFMTAVKQNYGEKVLIQVIESSMHGFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLADHTFLFLGAGEAGTGIAELIALEMSKQTKSPIEETRKKIWLVDSKGLIVNSRANSLQHFKKPWAHEHEPVSSLIDAVKAIKPTVLIGSSGVGKTFTKEVVEAMTSNNEKPLIMALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEHKGKVYFSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENYKKGLIYPPFSDIRKISANIAASVAAKAYELGLATRLPRPENLVKYAESCMYTPLYRNYR. 611
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06721 610 ProSitePatterns Malic enzymes signature. 322 338 IPR015884 GO:0004471
Seca12g06721 610 Pfam Malic enzyme, N-terminal domain 127 315 IPR012301 GO:0004471
Seca12g06721 610 PANTHER MALIC ENZYME-RELATED 19 610 - -
Seca12g06721 610 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 326 609 IPR036291 -
Seca12g06721 610 SMART malic_2 127 316 IPR012301 GO:0004471
Seca12g06721 610 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 29 325 IPR046346 -
Seca12g06721 610 Gene3D - 50 323 IPR037062 GO:0004471
Seca12g06721 610 Gene3D - 324 610 - -
Seca12g06721 610 CDD NAD_bind_1_malic_enz 326 604 - -
Seca12g06721 610 Pfam Malic enzyme, NAD binding domain 326 578 IPR012302 GO:0051287
Seca12g06721 610 PRINTS Malic enzyme signature 193 222 IPR001891 GO:0004470|GO:0004471
Seca12g06721 610 PRINTS Malic enzyme signature 456 472 IPR001891 GO:0004470|GO:0004471
Seca12g06721 610 PRINTS Malic enzyme signature 133 157 IPR001891 GO:0004470|GO:0004471
Seca12g06721 610 PRINTS Malic enzyme signature 229 251 IPR001891 GO:0004470|GO:0004471
Seca12g06721 610 PRINTS Malic enzyme signature 353 369 IPR001891 GO:0004470|GO:0004471
Seca12g06721 610 FunFam Malic enzyme 50 323 - -
Seca12g06721 610 PIRSF ME 23 610 IPR001891 GO:0004470|GO:0004471
Seca12g06721 610 FunFam Malic enzyme 324 610 - -
Seca12g06721 610 SMART Malic_M_2 326 579 IPR012302 GO:0051287
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g06721 Seca-Chr12 159276606 159281482 Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06721 12 159276606 159281482 Seca4g08708 4 207391858 207397887 ECH
Seca12g06721 12 159276606 159281482 Seca4g11858 4 259229941 259235614 ECH
Seca12g06721 12 159276606 159281482 Seca4g00686 4 11447054 11451477 ECH
Seca12g06721 12 159276606 159281482 Seca12g06721 12 159276606 159281482 ECH
Seca12g06721 12 159276606 159281482 Seca12g06721 12 159276606 159281482 PCT