Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06718 ATGCCGCTGTCCATAGATTTGGAAATCTTCGATCTGGACGAGGCTCTTGCGGTGGTCGGAGAATCACGCTGCCTGTTTGGAGCGTGGAAGACCTTTGTCTCGAACTTGCCGGCGGTTGTGGAGGTCGCCGAGGACGATATTTGTTCTGTTTGTATGGAAGGCTTTGATCGACACAACAAGTCAGGTGAGGGAAACAAACGAGTGCCGTGTGGACACGTGTACCATTCAAACTGCATCACCATGTGGCTCCAGCGCTGCAATTCTTGTCCTCTTTGCCGCCGCCATATCTCCCTTCACTTCTAA 303 0.5215 MPLSIDLEIFDLDEALAVVGESRCLFGAWKTFVSNLPAVVEVAEDDICSVCMEGFDRHNKSGEGNKRVPCGHVYHSNCITMWLQRCNSCPLCRRHISLHF. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06718 100 SUPERFAMILY RING/U-box 40 98 - -
Seca12g06718 100 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 30 95 - -
Seca12g06718 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 98 IPR013083 -
Seca12g06718 100 ProSiteProfiles Zinc finger RING-type profile. 48 93 IPR001841 -
Seca12g06718 100 Pfam Ring finger domain 47 93 IPR001841 -
Seca12g06718 100 SMART ring_2 48 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06718 Seca-Chr12 159267881 159268183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06718 47 93 C3H Transcription Factor Family AT3G60080 53.191 2.47e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06718 K22378 - gmx:102669154 145.206