Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06716 ATGCACGATGTTATAGCAGAAGAGTGGGACCGAGAAATTGCAGGTGGCGCTGAATGGAGGAGAAGGTGGGAAGCCGTATTTGCTAATGGCTTTGAGAGGACTGACAATGAAATCTTATCAGACGCAGTTGCACCAGAAATGGTTGGATCTACTGCCTCCGTGGTGGTTCTATCTTGTTGCCAAATTATTACATCCAACTGCGGCGACTCAAGGGTTGTTCTTTGCCGCAAGACTCAAACAATCCCCTTGACAGTGGATCAGAAGCCTGATAGACAAGATGAACTCATGAGAATTGAAGGAGGAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGAGTTCTTGCCATGTCCAGGGCCATAGGAGATCGGTACTTGAGACCATGGATTATTCCGGTGCCGGAGATAACTTTTACAGCAAGAACGGACGAGGATGAGTGCTTAATTTTAGCAAGTGATGGACTGTGGGATGTAATGACCAATGAAGAGGTTGGAGAAGTAGCGCGCCACATTCTAAGAAGGCGCCGCAGAACCTTATCAATGGAGGAAACATCTCCAGCACAAATTGTTGCTGATAGCCTGACTGAAATTGCATATGGTAGAAATAGTAAAGATAACATTTCAATCATAGTTATTGATCTGAAATCAAAGAGAAAACGTCAGCCAAGGCCTCCTTAG 684 0.4518 MHDVIAEEWDREIAGGAEWRRRWEAVFANGFERTDNEILSDAVAPEMVGSTASVVVLSCCQIITSNCGDSRVVLCRKTQTIPLTVDQKPDRQDELMRIEGGGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTDEDECLILASDGLWDVMTNEEVGEVARHILRRRRRTLSMEETSPAQIVADSLTEIAYGRNSKDNISIIVIDLKSKRKRQPRPP. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06716 227 Pfam Protein phosphatase 2C 23 209 IPR001932 -
Seca12g06716 227 SUPERFAMILY PP2C-like 2 217 IPR036457 -
Seca12g06716 227 PANTHER PROTEIN PHOSPHATASE 1 216 IPR015655 GO:0004722|GO:0006470
Seca12g06716 227 SMART PP2C_4 3 214 IPR001932 -
Seca12g06716 227 FunFam Protein phosphatase 2C 50 11 224 - -
Seca12g06716 227 CDD PP2Cc 1 216 IPR001932 -
Seca12g06716 227 Gene3D - 1 225 IPR036457 -
Seca12g06716 227 ProSiteProfiles PPM-type phosphatase domain profile. 1 216 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06716 Seca-Chr12 159245802 159252514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06716 1 226 PP2C-type Phosphatase Gene Family AT4G26080 50.617 1.06e-75 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06716 K14497 - gmx:100793293 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06716 12 159245802 159252514 Seca12g06716 12 159245802 159252514 ECH