Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06708 ATGGGGAGAGCTACTAGGTGGTTGAAGGGCTTGTTTGGGATAAAGAAAGACAGAGAACACAAAGAAAATTCAAATTCTGGCACCAAATGGTCTCCTCCTGTTCATTCAGAGAGAGATTCAAAAGGCTTGTGTCATAATCCAACCACCATTCCACCTAACATTTCACCAGCAGAGGCTGCTTGGTTACAATCCTTCTACTCAGAAACAGAGAAGGAGCAGAACAAGCATGCCATTGCAGTAGCTGCTGCTACAGCAGCTGCAGCAGATGCTGCTGTGGCTGCTGCTCAGGCTGCTGTGGCAGTTGTTAGGCTAACCAGCCAAGGAAGAGACACCATGTTTGGTGGTGGTGGTGGTGGTGGACATCACAGGTTGGCTGCTGTCAAGATTCAAACTGTATTTAGGGGATACTTGGCAAGGAAGGCACTGAGAGCCTTAAAAGGATTGGTTAAGTTACAAGCTCTTGTGAGAGGGTACTTGGTGAGGAAGCAAGCGACAGCAACCCTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCAACAGTAAGGTCTCACAAATCTCGCGGACTCATGAACACAAAAAATGAAGCATATAGGCTTCAAACACAAGCACGAAGATCCATGGAGAGGTTTGATGACAATAGAAGTGAATACACAGCTCCCATCCACAGCAGAAGGCTATCATCTTCTTTTGATGCCACGTTGAACAACACTAACAGTGTTGATGGAAGCCCAAAAATAGTGGAAGTGGACACTGGAAGGCCAAAGTCAAGGTCTAACAGGAGTAACACATCAATGTCAGATTTTGGTGATGACCCATCATTTCAACCACATCCCTCTCCCATCCCAATCCAGTGTCACATCCCTGCTCATTTATCCATACCAGATCACAGGAATTTCCATGAGTCAGATTGGGGCTTAACAGGGGAAGAGTACAGATTCTCCACAGCACAGAGCACACCACGCTTCACAAGCTCTTGTAGTTGTGGGTCTGTTGCTCCTGTCACACCTAAAACCGTTTGTACTGATAATAACTTCTTCCTTGCACAATATGGCAATTTCCCAAATTACATGGCCAACACTCAGTCTTTCAAGGCTAAATTAAGGTCTCATAGTGCTCCAAAGCAACGTCCAGAACCAGGTCCAAAGAAGAGGCTTTCCCTTAATGAGATGATGGAATCTAGGAGTAGTTTGAGTGGGGTTCGAATGCAGAGGTCTTGCTCACAGATTCAAGAAGCTATTAATTTTAAGAATGCTGTGATGAGTAAGCTTGAGAAGTCCACAGAAATTGGTAGGGAGACAGAGAGGAACTTCTCCTACCAGAGGAGGTGGTGA 1332 0.4565 MGRATRWLKGLFGIKKDREHKENSNSGTKWSPPVHSERDSKGLCHNPTTIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRDTMFGGGGGGGHHRLAAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSHKSRGLMNTKNEAYRLQTQARRSMERFDDNRSEYTAPIHSRRLSSSFDATLNNTNSVDGSPKIVEVDTGRPKSRSNRSNTSMSDFGDDPSFQPHPSPIPIQCHIPAHLSIPDHRNFHESDWGLTGEEYRFSTAQSTPRFTSSCSCGSVAPVTPKTVCTDNNFFLAQYGNFPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLSLNEMMESRSSLSGVRMQRSCSQIQEAINFKNAVMSKLEKSTEIGRETERNFSYQRRW. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06708 443 Pfam Protein of unknown function (DUF4005) 319 400 IPR025064 -
Seca12g06708 443 Gene3D - 120 174 - -
Seca12g06708 443 Pfam IQ calmodulin-binding motif 149 163 IPR000048 GO:0005515
Seca12g06708 443 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Seca12g06708 443 SMART iq_5 144 165 IPR000048 GO:0005515
Seca12g06708 443 SMART iq_5 121 143 IPR000048 GO:0005515
Seca12g06708 443 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Seca12g06708 443 MobiDBLite consensus disorder prediction 18 41 - -
Seca12g06708 443 MobiDBLite consensus disorder prediction 256 270 - -
Seca12g06708 443 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Seca12g06708 443 MobiDBLite consensus disorder prediction 371 388 - -
Seca12g06708 443 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Seca12g06708 443 MobiDBLite consensus disorder prediction 365 388 - -
Seca12g06708 443 MobiDBLite consensus disorder prediction 232 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06708 Seca-Chr12 159156310 159158847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06708 1 402 IQD Protein Family AT3G16490 52.941 5.49e-98 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06708 - - aprc:113866809 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06708 12 159156310 159158847 Seca12g06708 12 159156310 159158847 ECH