Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06707 ATGGCACTTGAACTCCCAAATTACTTATTCTCTCTGAGAATGTCAAATTTACATTCCATTTTCTATGTTTCAGTAGTTCTTCTTATTCTGCAAAATCCCAATGTAGCACAATGCCATACAAAGGGAATTCAACCAAGGCATTCTGTATGGACTGGTGGACTATCAATGAATATGACCAGAATCCAAAACTCAGAACAACAGTTCATGAAATGGGTGAGATTTGTTGGTGGGCTCAGACACTCTATCTTCAGAACAGCCAAAAATAAGCTCTTTCCTTCATACACATTGCACGTTTCTAAGCATGGAGGTAAAGGGGGTTTCTCATCAATTCAAGAAGCCATTGATTCCCTTCCATTCATCAATCTAGTGAGAGTGGTCATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTGAGATTCCTCCTTTTAAATCCTTCATAACCATTCAAGGAGCAGGAGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACTCTTGGGCCAAAAGGCCAGCCACTGGGAACCTATGGTTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTTCCCCAGTTCCACGACCAGGAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATCTCAGCAGATACAGCAATATTCCTTGGCTGCAAATTCTTTGGAGCACAGGACACACTCTATGATCATGTGGGTAGGCATTACTACAAGGATTGCTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGGTCTCTCTCTGTTTGAGGGGTGTCACGTGCATGCCATAGCACAAAATACAGGGGCCCTAACAGCCCAAGGAAGGAACAGTCTATTAGAAGACACGGGTTTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTATACCTTGGAAGGGCCTGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGTATAATTGGGGCGATCCCAACCGTGAAATGTAA 1041 0.4323 MALELPNYLFSLRMSNLHSIFYVSVVLLILQNPNVAQCHTKGIQPRHSVWTGGLSMNMTRIQNSEQQFMKWVRFVGGLRHSIFRTAKNKLFPSYTLHVSKHGGKGGFSSIQEAIDSLPFINLVRVVIKVHAGVYTEKVEIPPFKSFITIQGAGADKTIVQWGDTAQTLGPKGQPLGTYGSATFAVNSPYFIAKNITFKNTSPVPRPGAVGKQAVALRISADTAIFLGCKFFGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQNTGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREM. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06707 346 Gene3D - 57 346 IPR012334 -
Seca12g06707 346 Pfam Pectinesterase 101 340 IPR000070 GO:0030599|GO:0042545
Seca12g06707 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 90 345 - -
Seca12g06707 346 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Seca12g06707 346 SUPERFAMILY Pectin lyase-like 91 344 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06707 Seca-Chr12 159151241 159154184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06707 7 339 Carbohydrate Esterase AT5G47500 43.544 8.96e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06707 K01051 - gmx:100802832 590.112