Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06702 ATGTCGTGGCAAACCTATGTCGATGACCACCTTCTCTGCGACATCGAAGGAAATCACCTGACTTCTGCTGCTATCATCGGCCAAGACGGCAGCGTTTGGGCTCAGAGTTCCAATTTCCCTCAGGTTTTCAAGCCTGAGGAAATAACTGCTATCATGAATGACTTCAATGAGCCTGGATCGCTTGCTCCAACTGGATTGTATCTTGGTGGCACAAAATATATGGTGATCCAAGGTGAGCCGGGAGCTGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACTGTGAAGAAGACCAATCTGGCCTTGGTTATTGGTATTTATGATGAACCAATGACTCCGGGTCAGTGCAACATGGTAGTTGAAAGGCTTGGTGATTATCTCATTGAACAAGCTCTCTAA 399 0.4712 MSWQTYVDDHLLCDIEGNHLTSAAIIGQDGSVWAQSSNFPQVFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMVVERLGDYLIEQAL. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06702 132 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Seca12g06702 132 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Plant profilin signature 72 81 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Plant profilin signature 105 118 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Plant profilin signature 53 67 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Plant profilin signature 118 131 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Plant profilin signature 85 100 IPR005455 GO:0003779
Seca12g06702 132 FunFam Profilin 1 132 - -
Seca12g06702 132 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Seca12g06702 132 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Seca12g06702 132 CDD PROF 2 130 IPR005455 GO:0003779
Seca12g06702 132 Pfam Profilin 1 130 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Profilin signature 65 79 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Profilin signature 101 114 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Profilin signature 114 131 IPR005455 GO:0003779
Seca12g06702 132 PRINTS Profilin signature 41 61 IPR005455 GO:0003779
Seca12g06702 132 SMART prof_2 1 132 IPR005455 GO:0003779
Seca12g06702 132 Gene3D Dynein light chain 2a, cytoplasmic 2 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06702 Seca-Chr12 159102526 159105904 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06702 1 132 Cytoskeleton Gene Families AT2G19760 79.545 4.28e-77 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06702 K05759 - rcu:8265128 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06702 12 159102526 159105904 Seca12g06702 12 159102526 159105904 ECH