Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06700 ATGTCGTGGCAAACTTACGTCGATGAACATTTGATGTGCGATATTGATGGCACAGGTCACCACCTCTCCGCCGCTGCCATCATCGGCCATGATGGCTCCGTCTGGGCTCAGAGCTCTTCCTTCCCTCAGTTTAAGGGTCAGGAGATCACTGATATCATGAAAGATTTCGACGAACCCGGTCATCTTGCTCCTACAGGCTTGCACCTTGGAGGAGTCAAATACATGGTCATCCAAGGAGAGTCTGGAGCTGTCATCCGGGGTAAAAAGGGATCTGGAGGCATCACCATAAAGAAAACGGGTCAAGCTCTAGTTTTTGGCCTCTATGAGGAACCTGTGACTCCTGGACAATGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTCATTGATCAGGGTCTCATGTCGTGGCAAACCTACGTCGATGACCACCTTCTCTGCGACATCGAAGGAAATCGCCTGACTTCTGCTGCTATCCTCGGCCAAGACGGCAACGTTTGGGCTCAGAGTTCCAATTTCCCTCAGTTCAAACCTGAGGAAATAACTGCTATCATGAATGACTTCAATGAGCCTGGATCGCTTGCTCCAACTGGATTGTATCTTGGTGGCACAAAATATATGGTGATCCAAGGTGAGCCGGGAGCTGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACTGTCAAGAAGACCAATCTGGCCTTGGTCATTGGCATTTATGATGAACCAATGACTCCGGGTCAGTGCAACATGGTAGTTGAAAGGCTTGGTGATTATCTTATTGAACAGGCTCTCTAA 795 0.4906 MSWQTYVDEHLMCDIDGTGHHLSAAAIIGHDGSVWAQSSSFPQFKGQEITDIMKDFDEPGHLAPTGLHLGGVKYMVIQGESGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLIDQGLMSWQTYVDDHLLCDIEGNRLTSAAILGQDGNVWAQSSNFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMVVERLGDYLIEQAL. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06700 264 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Seca12g06700 264 CDD PROF 2 132 IPR005455 GO:0003779
Seca12g06700 264 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Seca12g06700 264 PANTHER PROFILIN 134 263 IPR005455 GO:0003779
Seca12g06700 264 CDD PROF 135 262 IPR005455 GO:0003779
Seca12g06700 264 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Seca12g06700 264 Gene3D Dynein light chain 2a, cytoplasmic 135 264 - -
Seca12g06700 264 SMART prof_2 1 133 IPR005455 GO:0003779
Seca12g06700 264 SMART prof_2 134 264 IPR005455 GO:0003779
Seca12g06700 264 SUPERFAMILY Profilin (actin-binding protein) 135 262 IPR036140 -
Seca12g06700 264 PRINTS Profilin signature 197 211 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Profilin signature 154 163 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Profilin signature 136 145 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Profilin signature 246 263 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Profilin signature 173 193 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Profilin signature 233 246 IPR005455 GO:0003779
Seca12g06700 264 FunFam Profilin 134 264 - -
Seca12g06700 264 FunFam Profilin 1 133 - -
Seca12g06700 264 Pfam Profilin 1 132 IPR005455 GO:0003779
Seca12g06700 264 Pfam Profilin 134 262 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Seca12g06700 264 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06700 Seca-Chr12 159079510 159091299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06700 134 264 Cytoskeleton Gene Families AT4G29340 71.642 6.04e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06700 K05759 - gmx:100784770 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06700 12 159079510 159091299 Seca12g06700 12 159079510 159091299 ECH