Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06694 ATGAATAATAAGATGAGCAACTTGAGTACTTGTGTTGTAAGGAGCTCTGATCTGATAGATTCAAAGCTGGAAGAGCATCAGTTGTGTGGATCCAAACAGTGTCCTAGTTGTGGACACAAGTTTGAAGGGAAGCCGGATTGGCTAGGTCTACCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTGGAAGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCTTACTATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGACACTTTTTCCATAGACCTTCAAAGGCATACACAACAGGGACAAGGAAGAGGAGAAAGATTCAAAATGAATGTGACTTGCAAGGAGGAGAAACCAGATGGCACAAGACTGGAAAGACAAGGCCAGTGATGGTGAATGGGAAACAAAAAGGGTGCAAGAAGATTCTTGTGCTGTACACCAATTTTGGAAAGAACAGAAAACCAGAGAAGACCAACTGGGTGATGCATCAATACCATCTTGGACAGCATGAAGAAGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGGCAATGCAATTGGTCAGATCATAGAATAACTGGTGAAGGGATTAGTGGAGAACAGCCTAACAACATTAATGGCAGTGGAAGTTGTACTTCTTCTAAGGAAATAGTTACTAGCAGGGATGAAATGTCTGCTGTAGTTGTTGGTGTCCCTCCAATCACAAGCTTCACCACTGCCTTGGATATTCAACACCTAAAATCAGATCATTTCAGCACCACCTTCATCCCATTCAGAAAAACCTTCGATCAGGGTGGAATAGGAGAAGCTTCCAGAGGAAGAGAAGTGCAAGCATGTGAAGAAGTTGCAACGACAGCGTTTCATATAAGTAGGCCTTCTCATCCGATCTCCACCATCATCTCTCCACCGCCTCTCCATCACACATCCATCATCTTAGACGACAACTCTTACCATATAATGCTCCAAAATCAAAATTTCCACCAGCAACAAGCTGAACATCATAAACTTGGAGGAAGGTCTGCGTCTGCGGGTTTGGAGGAACTCATTATGGGGTGCACTTCTTCAACGGATCATATCAAAGAGGAGTCATCCATTAGAAATCCAGAAGAAGCTGCTGAATGGATGAAGTACTCATCTTACTGGCCAGATCCTGAGGACCATCATCATCATCATGAGTAA 1275 0.4298 MNNKMSNLSTCVVRSSDLIDSKLEEHQLCGSKQCPSCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDHRITGEGISGEQPNNINGSGSCTSSKEIVTSRDEMSAVVVGVPPITSFTTALDIQHLKSDHFSTTFIPFRKTFDQGGIGEASRGREVQACEEVATTAFHISRPSHPISTIISPPPLHHTSIILDDNSYHIMLQNQNFHQQQAEHHKLGGRSASAGLEELIMGCTSSTDHIKEESSIRNPEEAAEWMKYSSYWPDPEDHHHHHE. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06694 424 Gene3D NAC domain 59 215 IPR036093 GO:0003677|GO:0006355
Seca12g06694 424 ProSiteProfiles NAC domain profile. 50 211 IPR003441 GO:0003677|GO:0006355
Seca12g06694 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 11 387 IPR044799 GO:0003700
Seca12g06694 424 FunFam NAC domain-containing protein 73 59 215 - -
Seca12g06694 424 Pfam No apical meristem (NAM) protein 51 192 IPR003441 GO:0003677|GO:0006355
Seca12g06694 424 SUPERFAMILY NAC domain 46 211 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06694 Seca-Chr12 159028431 159031565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06694 17 417 NAC Transcription Factor Family AT5G56620 51.716 1.30e-132 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g06694 NAM 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06694 - - gmx:100794811 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06694 12 159028431 159031565 Seca12g06694 12 159028431 159031565 ECH