Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06686 ATGATGTTAGGGGAACCCCACCGTGCAAATCCAACCGTACACGTGCCTCCGTGGCCGATCGTCAATGATTCAACGCCGGAGATCTTTTCCCCGTTAACCGCCAATGCCGATTACTCTCCGTTTTACTTGCAAGAAGCACTGAATGCGCTTCAGCAATATGTTCCCTCCAACGACCATGACGCCGATTCTGACTCGGAGGTTCCGAGTCGTGAATCGTTGGATGCATACTCGTGCGATCATTTCCGCATGTTCGAGTTCAAAGTTCGGAAATGCGCACGTGGCAGGTCACATGACTGGACGGAGTGCCCTTTCGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGACCCAAGGAAGTACCACTATTCCGGCACGGCGTGTCCCGATTTTCGCAAGGGGAATTGCAAGAAGGGCGATGCATGTGAGTTCGCTCATGGAGTGTTCGAGTGCTGGCTCCACCCTGCGCGCTACCGGACTCAGCCTTGTAAGGACGGCACCAGTTGCCGCCGGAGGGTTTGTTTCTTCGCACACACGCCGGAGCAACTCAGGGTCCTTCCTCAGCAGAGTCCCCGGAGTGTAAACTCCGCTGCTGATTCTTATGATGGTTCCCCTCTGAGACTCGCGATTGAGTCCTCATGTGCCAAGACGCTTCCATTTGTGTCTTCTCCTGGTTCGGTTTCCCCGCCGGTGACTCCTCCGGTGGAGTCTCCGCCGATGTCGCCGATGACTCGGTCGCTGAGCCGGTCTCTTGGTTCGAACTCTGTTAGTGTGAATGAGATGGTGGCTTCTCTGCGTAATTTGCAACTTGGTAAGGTGAAGTCCTTGCCATCTTCTTGGAATGTTCCAGTGGGAATGGGGTCTCCTGGGTTCGGATCCCCGAGAGGACCCGTGATCCGACCCGGATTCTGTAGCCTGCCATCGACTCCTACGCAGGCACCGTCACGTGGGGGTGTTAACTATTTTGATCTCTGGGATCAGAGGTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGAGACATAAGGGCGAAGATGTTTGAGAAATTAAGCAAAGAGAATTCTCTGGGTAGATCGGGTTCGGGTACAATGGATGGAGCTCCGGATATTGGATGGGTGTCGGAGCTGGTGAGCCCCTTCTTGGGTTGA 1149 0.5527 MMLGEPHRANPTVHVPPWPIVNDSTPEIFSPLTANADYSPFYLQEALNALQQYVPSNDHDADSDSEVPSRESLDAYSCDHFRMFEFKVRKCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVNSAADSYDGSPLRLAIESSCAKTLPFVSSPGSVSPPVTPPVESPPMSPMTRSLSRSLGSNSVSVNEMVASLRNLQLGKVKSLPSSWNVPVGMGSPGFGSPRGPVIRPGFCSLPSTPTQAPSRGGVNYFDLWDQRCEEEPVMERVESGRDIRAKMFEKLSKENSLGRSGSGTMDGAPDIGWVSELVSPFLG. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06686 382 Gene3D - 121 184 - -
Seca12g06686 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
Seca12g06686 382 MobiDBLite consensus disorder prediction 221 248 - -
Seca12g06686 382 MobiDBLite consensus disorder prediction 224 238 - -
Seca12g06686 382 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Seca12g06686 382 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Seca12g06686 382 PANTHER UNKEMPT FAMILY MEMBER 45 377 IPR045234 -
Seca12g06686 382 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Seca12g06686 382 SMART c3hfinal6 155 178 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06686 Seca-Chr12 158943016 158944164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06686 76 281 C2H2 Transcription Factor Family AT5G12850 48.558 6.98e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g06686 zf-CCCH 3.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06686 - - aprc:113867365 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06686 12 158943016 158944164 Seca12g06686 12 158943016 158944164 ECH