Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06675 ATGAGTAGCCAAAAGGGTCATTATGAAGAAGGGATGGGTTCCTCGGAGGTCACTGGGAAAGTGGTGGTGGTTGCAGTCAAAGCTTCCAAAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTATTAGTCCTCATTCCAGCTCTCTCCTCAAGCAAGAGGGTATGGGGCCTTTCAAGATTTACTACTGATTGTACCTCTAGTCACTGGAGATCCCGTTTAGGAACTCCTTCAGATCAGAAAGAAGTTATTACAAATTCCTGTTCTCAATTAGTGCTTCAACTCCATGATTTTTATGATCCAGAGAAGATAAAGATCAGAGTAAAGGTTCTTTCTGGTTCTTTATGCGGAGCTGTGGCTGCTGAAGCCAAGAGAGTCCAAGCAAGCTGGACAGGCAAGAGGGTATGGGGCCTTTCAAGATTTACTACTGATTGTACCTCTAGTCACTGGAGATCCCGTTTAGGAACTCCTTCAGATCAGAAAGAAGTTATTACAAATTCCTGTTCTCAATTAGTGCTTCAACTCCATGATTTTTATGATCCAGAGAAGATAAAGATCAGAGTAAAGGTTCTTTCTGGTTCTTTATGCGGAGCTGTGGCTGCTGAAGCCAAGAGAGTCCAAGCAAGCTGGGTTATATTGGAGAAAAAATTGAAACCTGAAAAGAAGTACTGCATGGAGCAGCTGCATTGCAATATTGTAATTATGAAGCGGTCTCATCCAAAGATTCTACGCTTGAATTTGAATGGTTCACCAAAGATGGAACTCAAAAGGGATTGTTCATTGTCATTGGAGCAGAATTTATATACTAGAAACTTAAAAGACAACTATGAACATCCAGATGTAATGAGAGGTCCAGCTGTTACTCCTGCTAGTAGTCCAGAGCAAGGGTCACCACCATTAACTGCAACTGATATTGGAACATCATCAATATCAAGCTCAGATCCTGGGACTTCACCATTTTTCCACTCTGATAATTATGAAAGAAGAAGGAGGGGTTTTCCCTTTATTCATGAAGGACTGACAAACTTGGAGGAAATTGAATCTGACTCAGAGAGTGAAAAGCTAAGTTTATCATCCAAAAGTTCATATTTTCAGCCATGGATATCAAATGTAATTTGTATTGATGGTGAATTCTCAAAACATGAGGACAATATGCAACAATCTACAGATAATGCTTTGGTTTCTACCTATGAAGCTTTGCTTCAGAAATTCTCAAAGTTGGATCAAGATCCTATCTTAGGAGTACTTAATTGTAAAATTGATGTGAACTTAAGCAAAAGTGTCAGAGAAGCAATTTCACTAGCCAAAAGTGCACCTCCTGGACCTCCCCCATTATGCTCTATTTGTCAGCACAAGGCACCTGTGTTTGGGAATCCTCCAAGGTGGTTTACATTTGCTGAATTGCAACTTGCTACTGGTGGTTTTTCACAAGCAAACTTCTTGGCTGAAGGTGGTTTTGGTTCTGTACACCGTGGTGTCCTACCTGATGGGCAAGTCATTGCTGTGAAGCAATATAAAATAGCCAGTACTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAGGTTTTAAGCTGTGCTCAACATCGGAATGTTGTGATGCTAATTGGGTTTTGTGTGGAAGATGGAAGAAGATTGCTAGTTTATGAATACATCTGCAATGGATCTCTGGATTCTCATCTCTACGGACGAAAGCAGAATGTATTGGAATGGTCTGCACGGCAAAAAATTGCAGTTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGCATTGTGCACCGTGATATGAGGCCTAACAATATCCTCCTCACTCATGATTTTGAAGCATTAGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGAGATATGGGTGTGGAAACCAGGGTGATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCATTTGGGATAGTATTACTGGAGCTTGTGACAGGACGAAAAGCTGTGGATATAAACCGCCCCAAGGGCCAGCAATGCCTCAGTGAATGGGCACGCCCATTGCTTGAAGAACAAGCCACTCTTAAACTAGTGGATCCGAGCATAAGGAACTGCTATGTTGATCAAGAGGTTTATCGCATGCTGCAGTGTTCCTCTTTGTGCATCCAACGAGATCCTCATTTAAGGCCTAGAATGTCTCAGGTTAGAAAATTAATTCTCTATGGCCCAGTTTGGATACACGTCTACAGAAGAACTTTTAGAAAAATGAAATTAGAATAA 2331 0.4144 MSSQKGHYEEGMGSSEVTGKVVVVAVKASKDISRTALVWALTHVVQPGDCIKLLVLIPALSSSKRVWGLSRFTTDCTSSHWRSRLGTPSDQKEVITNSCSQLVLQLHDFYDPEKIKIRVKVLSGSLCGAVAAEAKRVQASWTGKRVWGLSRFTTDCTSSHWRSRLGTPSDQKEVITNSCSQLVLQLHDFYDPEKIKIRVKVLSGSLCGAVAAEAKRVQASWVILEKKLKPEKKYCMEQLHCNIVIMKRSHPKILRLNLNGSPKMELKRDCSLSLEQNLYTRNLKDNYEHPDVMRGPAVTPASSPEQGSPPLTATDIGTSSISSSDPGTSPFFHSDNYERRRRGFPFIHEGLTNLEEIESDSESEKLSLSSKSSYFQPWISNVICIDGEFSKHEDNMQQSTDNALVSTYEALLQKFSKLDQDPILGVLNCKIDVNLSKSVREAISLAKSAPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKIASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEEQATLKLVDPSIRNCYVDQEVYRMLQCSSLCIQRDPHLRPRMSQVRKLILYGPVWIHVYRRTFRKMKLE. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06675 776 MobiDBLite consensus disorder prediction 301 331 - -
Seca12g06675 776 PANTHER OS01G0750732 PROTEIN 358 754 - -
Seca12g06675 776 ProSiteProfiles Protein kinase domain profile. 486 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06675 776 CDD STKc_IRAK 492 752 - -
Seca12g06675 776 Gene3D Transferase(Phosphotransferase) domain 1 562 758 - -
Seca12g06675 776 ProSitePatterns Tyrosine protein kinases specific active-site signature. 607 619 IPR008266 GO:0004672|GO:0006468
Seca12g06675 776 Pfam Protein tyrosine and serine/threonine kinase 490 754 IPR001245 GO:0004672|GO:0006468
Seca12g06675 776 MobiDBLite consensus disorder prediction 285 331 - -
Seca12g06675 776 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 562 764 - -
Seca12g06675 776 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 458 561 - -
Seca12g06675 776 Gene3D Phosphorylase Kinase; domain 1 458 561 - -
Seca12g06675 776 SUPERFAMILY Protein kinase-like (PK-like) 466 755 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06675 Seca-Chr12 158832280 158845825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06675 445 755 Trihelix Transcription Factor Family AT1G68690 50.476 5.69e-101 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca12g06675 PK_Tyr_Ser-Thr 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06675 - - aprc:113855006 1134.78