Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06668 ATGGGGAGGAAGTGCTCACATTGTGGAAATGTAGGCCATAATTCAAGGACCTGCAGCACAATAATATCATCATCTACTACTAGTACTGGAGGACTAATTCGCCTCTTTGGCGTGCAACTACAACAAGAACAAGAACAAGGTGACTCTTCAATATTATCATCTACCATCAAGAAATGCTTTAGCATGGACTCTTTACCGCCCTCTTCTTCATCACCATCTTCCTCAATTGGCTATCTATCCGACGGTCTTATACCTCGCCCCCAAGACTGCAGGAAAAAAGGAGTTCCATGGACAGAAGAGGAGCACCGAATGTTCCTGGCAGGATTAGAGAAGCTAGGAAAAGGAGATTGGAGAGGAATCTCTAGAAACTTTGTCACTACAAGAACCCCAACTCAAGTCGCCAGCCATGCTCAAAAGTACTTTCTCAGATTGCAGCCTTCTTCTATCAATAACAAGAATAAGCAGCGACGTTCAAGTCTCTTTGACTTGGTTGGTAATGCCAATAGCAATTGCAAAAGAGGAGAAGGTGGTGGTCATCCTCCAATTACTGTTACTGTTAATAATTATAAGTACTGCAACAAGGCTGCAGCAGGCGAATGTGAGAATGTTGATGCCACTAATTATAATTTGTCAATATTATTGCAGCAACAAGTAGCTGATAATAAATACTCCATGGCCTCCTCATCACAAGATCAAATTCAATTACCTGCAGCTGCTCCTATCTGCAGCTGGCATCCAGCTGCAGGCAATGAAGCAGCAATAGCAGTACTGCCTGATCTGGAACTCACTCTTGCAGCTCCTAATGCTAACATGCTTGGACCAATTACCGTCACTTAA 837 0.4325 MGRKCSHCGNVGHNSRTCSTIISSSTTSTGGLIRLFGVQLQQEQEQGDSSILSSTIKKCFSMDSLPPSSSSPSSSIGYLSDGLIPRPQDCRKKGVPWTEEEHRMFLAGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLQPSSINNKNKQRRSSLFDLVGNANSNCKRGEGGGHPPITVTVNNYKYCNKAAAGECENVDATNYNLSILLQQQVADNKYSMASSSQDQIQLPAAAPICSWHPAAGNEAAIAVLPDLELTLAAPNANMLGPITVT. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06668 278 FunFam transcription factor MYB1R1 95 146 - -
Seca12g06668 278 ProSiteProfiles SANT domain profile. 97 145 IPR017884 -
Seca12g06668 278 Gene3D - 95 146 - -
Seca12g06668 278 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Seca12g06668 278 Pfam Myb-like DNA-binding domain 96 141 IPR001005 -
Seca12g06668 278 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 143 IPR006447 GO:0003677
Seca12g06668 278 ProSiteProfiles Myb-like domain profile. 96 141 IPR001005 -
Seca12g06668 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
Seca12g06668 278 PANTHER TRANSCRIPTION FACTOR KUA1 3 215 - -
Seca12g06668 278 CDD SANT 96 141 IPR001005 -
Seca12g06668 278 SUPERFAMILY Homeodomain-like 90 145 IPR009057 -
Seca12g06668 278 SMART sant 93 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06668 Seca-Chr12 158756042 158757377 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g06668 Myb_DNA-binding 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06668 - - pvu:PHAVU_004G171200g 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06668 12 158756042 158757377 Seca12g06668 12 158756042 158757377 ECH