Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06654 ATGGCTGCATCATCACTATCATTTCCTTTCCATTGTTCTCCTACCACCAATGCTCTCCGATCATCCCCAAAATCAACTTTTTTCACTCTCCGTCGCACTTGCGTGTCGTGCAGTGTCAGCGATGGTGCACAACAGAGTCCCCTCCTCCAAGTCAATGACCTTAGGGCCAAAATCGTAGAGTCTAATGTCGAGATTCTTCACGGTGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGAAAGAACGGTTCTGGAAAGAGCACTTTCGCCAAGGTTCTTGTTGGACATCCAGATTATGAAGTTACCGGAGGCAGTGTTGTCTTCAAAGGGGAAAATCTGCTTGAGATGGAACCAGAGGAAAGGTCACTTGCAGGTCTTTTCATGAGTTTCCAATCCCCTGTTGAGATCCCTGGTGTTTCTAATGATGAGTTTCTCGTTATGGCCTACAATGCTCGAAGAAAAAAGCTTGGTCTTCCTGAGCTTGGACCACTCGAGTGCTTTTCTTACCTTATGGAGAAGCTCCAACTTGTTAACATGAAGCCTGATTTTCTCAATAGGAATGTCAATGAAGGATTTAGTGGCGGTGAACGCAAACGCAATGAAATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTGGATGAAATTGATTCTGGATTGGATGTTGATGCTCTCAGGGATGTAGCCAATGCAGTCAATAAGATTCTGACCCCAAAGAATTCTCTGTTGACGATAACTCATTATCGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGATATATCTATGGTAGAAGCTATTGAGGCAGAGGGATATGAAACAGTCTCTGCTTTAACTTAA 894 0.4463 MAASSLSFPFHCSPTTNALRSSPKSTFFTLRRTCVSCSVSDGAQQSPLLQVNDLRAKIVESNVEILHGVNLTINQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNKILTPKNSLLTITHYRRILDLLNPTHVHVMDKGKIARTGDISMVEAIEAEGYETVSALT. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06654 297 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 295 IPR003439 GO:0005524
Seca12g06654 297 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524|GO:0016887
Seca12g06654 297 CDD ABC_FeS_Assembly 49 290 IPR010230 GO:0005524
Seca12g06654 297 Pfam ABC transporter 66 220 IPR003439 GO:0005524
Seca12g06654 297 Gene3D - 48 296 IPR027417 -
Seca12g06654 297 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 36 294 IPR010230 GO:0005524
Seca12g06654 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 280 IPR027417 -
Seca12g06654 297 NCBIfam Fe-S cluster assembly ATPase SufC 49 292 IPR010230 GO:0005524
Seca12g06654 297 SMART AAA_5 75 272 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06654 Seca-Chr12 158615629 158619466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06654 62 277 Calmodulin-binding Proteins AT2G36910 23.581 2.61e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06654 K09013 - gmx:100811883 476.863