Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06653 ATGGAAGGCTATTACAGAACACGGAGAGAAAACGGAGTGACTGTGCCATCGTGTTCTTCTTCGCGTGAGGAATTCCACTCTCGCGGTGGAAAAGGACTACTGGGAAAGGCTAATGCTCCTTCATCTTCGAGATACGATATGACTGTAATCGGGAATGTTAAGAAGAAGCAAAAACGTAAATGTCTACAAGAGTTGTTTACAGAAGACTTCATTGTTAGCAATGTGTTACGGAAGGATGGCCCTCCACTTGGCCGGGAATTTGATTCTCTTCCTTATGGACCCAAAAATCACACTTCTGCTTGTCAAGAGGACCAAGGACCCACCAGAAGGAGGAAGGTTTCTACGAGTGCAATTCATAGTCGCCCTGATTGTAATATGAAAGCACCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACTAATCCTGATGCTGGAGACCTTCCAATTGGTTTTGGTTTTGCTGACCAAGAAGTTCATCAAATCTCTAATTCTATAGCACAGAAACCAGTCCATGAGAACAACAGGTCACGGAAGTCAGTAACCTTGAATGGAATGCCAAAAAATAAAATGCAGAGTAAGAGAAATAAATTACAGGATAAGAGGAAACTTTTCATGCAAAAAAGAGTGGGGGAGTCGAACCAATACGTGACTCAGGAGCAGTCACCAAAGGAAAAATGTGATCTTGCTTTAGATGGCGCAATACCAGAGGAGGGAGTTGATCGAATTTCAATGTTAATTGATGATGAAGAGCTAGAGTTGAGAGAGTTACAAGAAGGAACCAATGTGCTTGTATGTTCAGATCATCTTGTTGCCAGTGGAATGCTTGGCTGCTCACTTTGTAAAGATGTACTAGTTAAGTTCCCCCCAGAAACTGTCAAGATGAGAAAACCTATACGTTTGCAACCTTGGGACTCCTGTCCAGAACTTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTATAGTTGTTGATATATGTCCCTTCACTCTTGATGAGTTTGTTCAGGCATTTCATGACAAGGACTCAATGTTACTCGGAAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCTGACATCGAAGTTGAGCTTACTAATGGATTCTCACCTCATTTAAATAAGTCATGCAACTTTCTGGCCTTGCTTCACTCGGTTGAAAGTCGAGAATATTCCCTTGACTTCTGGAGAAGATCTCTAAATCCTCTTACATGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCAAAACAAAGTGCCTTGCGAAGAGAGGCCCTTAGCAAGGAATTAAATCTTCTTGTCAACTATGGCTTATGCCCTGGCACCTTGAAGGGTGAGTTGTTTAAAATCTTGTCAGAGCGAGGAAACAATGGATGCAAAGTATCTGACCTGGCAAAATCAATGCAGATTGCTGAATTAAACCTGGTCAGTACAACAGAGGAACTGGAGTCTTTAATATGTTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCATCTGCATATCGATTGCGAATGAGCACTGTTATGAAGGACAATGATGAATTTCAGTCAGATATGGAGGATTATGGAAGTGTCGATGATGAACTTAACGACACTGATACGTGTAGCAGTGGTGATGATTTTGAAAGTGATTCAATAAACACCAATATAAGAAAATTGAAGCGTGCAAACAGTCGGAAAATTAAAAATAATATCCTGAAAGTATACACTGAAATAGATGAGAGTCATCCAGGAGAAGTGTGGTTGTTAGGACTGATGGAAAGTGAATATTCAGATTTGAACATTGAGGAAAAATTGAATGCATTGGTGGCTCTAACTGATCTTGTTTCATCTGGATCCAGCATCAGGATGAAGGATCGAATAAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACGTGGTTCTGGAGCAAAAATAAAGAGGTCAGCAGTAAAGAAGGCTGGACCATTTTGGAACCAGGTTGGGCTAATGCAATGTGTTACAGAAGTGGACTTGAGTTCTCATTCCTGTCCAGTAGATTCTGCGTCATTAATCTCAAAATTCCATAGTCAGGCATCCTTTGACAAAGCAAAAGGATCAACTGATTCACACCCCATTCAATCAGTGTATTTGGGATCTGATCGTCGGTACAATAGATACTGGTTATTCTTGGGCCCTTGTAATGCAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCTTCTGAAGATAGTCACTGGGAGGTGATTGATACTGAAGAGGCATTGTGTGCCTTGTTGTCAGTTCTTGATGATAGAGGGAAACGGGAAGCTCTTCTTATTGAATCTCTGGAGAGGCGACAGACATCTCTATGCAGATCTATGTCCAGGATTAAGGTTAACAGTACTGGAATGGGGTGTATGTCACATTCTGATCAATCTGAGCTGGATTCTCCCATATCTGATGTAGACAACCTGAACTTGACTGAGACTGATAAAGACTCTTTGCAGTCATCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGCAGAGGAACAAATACAAAAGTGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTTGACTCTCTAGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGAAGACAGCAACACATTTCCAAATCATAAAGTCTTAGCATCACAGATTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTAGTCGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTCAAGCGGCTCAGACGCACCTCAACTTTAGTGGAACTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATGAGGACTGGTTATTCCAATGCAAATTTCCAGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACATCATCTGCCCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAAAAGCAGGGAATCGGTAAGCAAGGTCCTTGGTGA 3219 0.4098 MEGYYRTRRENGVTVPSCSSSREEFHSRGGKGLLGKANAPSSSRYDMTVIGNVKKKQKRKCLQELFTEDFIVSNVLRKDGPPLGREFDSLPYGPKNHTSACQEDQGPTRRRKVSTSAIHSRPDCNMKAPVKKHGIGKGLMTVWRATNPDAGDLPIGFGFADQEVHQISNSIAQKPVHENNRSRKSVTLNGMPKNKMQSKRNKLQDKRKLFMQKRVGESNQYVTQEQSPKEKCDLALDGAIPEEGVDRISMLIDDEELELRELQEGTNVLVCSDHLVASGMLGCSLCKDVLVKFPPETVKMRKPIRLQPWDSCPELVKKLFKVFHFIYTYAIVVDICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESREYSLDFWRRSLNPLTWIEILRQVLVASGFGSKQSALRREALSKELNLLVNYGLCPGTLKGELFKILSERGNNGCKVSDLAKSMQIAELNLVSTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVMKDNDEFQSDMEDYGSVDDELNDTDTCSSGDDFESDSINTNIRKLKRANSRKIKNNILKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALVALTDLVSSGSSIRMKDRIKVTADCNSSIQLRGSGAKIKRSAVKKAGPFWNQVGLMQCVTEVDLSSHSCPVDSASLISKFHSQASFDKAKGSTDSHPIQSVYLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDSHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRIKVNSTGMGCMSHSDQSELDSPISDVDNLNLTETDKDSLQSSGAVVIEAGKKAEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEDSNTFPNHKVLASQIQSLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLADFVGAINEDWLFQCKFPDGVVEEIIASFASMPHTSSALALWLVKLDAIIAPYLDRVHPQKKQGIGKQGPW. 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06653 1072 SMART testlast3 313 372 IPR018501 -
Seca12g06653 1072 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 594 633 IPR028942 -
Seca12g06653 1072 Pfam DDT domain 314 369 IPR018501 -
Seca12g06653 1072 MobiDBLite consensus disorder prediction 176 197 - -
Seca12g06653 1072 ProSiteProfiles DDT domain profile. 313 372 IPR018501 -
Seca12g06653 1072 MobiDBLite consensus disorder prediction 176 203 - -
Seca12g06653 1072 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 718 791 IPR028941 -
Seca12g06653 1072 MobiDBLite consensus disorder prediction 1 41 - -
Seca12g06653 1072 Coils Coil 193 213 - -
Seca12g06653 1072 PANTHER HOMEOBOX PROTEIN SIX 204 1059 - -
Seca12g06653 1072 MobiDBLite consensus disorder prediction 87 130 - -
Seca12g06653 1072 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06653 Seca-Chr12 158603516 158614088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06653 210 1066 Homeobox Transcription Factor Family AT1G28420 26.654 4.59e-74 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca12g06653 WSD 5.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06653 - - gmx:100792062 1746.1