Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06648 ATGTCAAGATCAATTATAGAGAAGAAGCTAGGTGCAGGACGTGTGGTGGCAGTGGCAATTGAAAACAACAAAACAAGCCAATATGCAGCAAAATGGGCAGTTGACAATCTTCTTCCTAAAGACCAACATCTCTTACTAATGCATGTTAGACAAAGAGCGTCTTCCATTCCTACACCAACGGGAAACCATGTATCTGTTGATGTCAATGATGATGTGGCTAGAGCATACATGCAACAAATGGACAATGAATCCAGGGAGCTTTTTGCTTCATTTCGTGTCTTCTGCAATAGAAAGAGTATACAATGCAAAGAAGTCTTGTTGGAGGACACGGATATATCAAAGGCAATAATGGAGAGTATTAACACATATTCCATTGAGCTTTTGGTACTCGGGGCACCATCAAGGAGTGGTCTTGTCAGAAGATTTAGGACAACTGATGTTCCAAGCGTTGTGTCTAAAGGGGCACCTCAATTCTGCACTGTGTACATTATTTCCAAAGGAAAAATCTCATCTGTGAGAACTGCTACTGCTCCACTACCTAAGCCTACACCCCGTAACAATACAATGCAGCCACAGCATTTCCAGAATCCTGAGAGAATGGATACACAACTAATACGCAATGCCCCACCAAGAAGATCAGCAGAGAGGCAAGCATACATTGCTCGCAAGCAAGTGGATGAAGAGGAAATCATATCACCATTCACAAGAGCTGGACCTGGAAGGCCAATCCTGAGATCCTATGAGTCCTCAATCCCTGACTCTGATATTTCATTTGTGAGCAGTGGAAGGCCAAGTATTGATAGGATGTTCCCTTCAATGTATGATGATCTGGACTCTGGAATAGCCCCTCCTCGGCTTTCATCAGGCTCAGATTATGATGTCAGAAGCTTCGGTTCATCTTTCTCAGGTGCTAAGTCAATTGATCAGGGTGACTACTCGTTCAGTTCACAAGACAGTGGGATGTCAATGTCATCATCAAGGTTATCAAATGGGGATGATGTAGAAGCTGAAATGAGGAGACTGAGGCTAGAACTGAAGCAAACAATGGAAATGTACAGTACAGCTTGCAAGGAAGCTTTGACAGCAAAGCAGAAGACACTGGAACTTCAGCGTTGGAAACTAGAAGAACAAAGGAAATTTGAAGATGCACGATTAGCTGAAGAAACAGCATTGGCAATAGCTGAGAAGGAGAGAGCAAAATGTAAAGTAGCCATGGAGGCAGCAGAAGCATCTCGAAAATATGCAGAATTGGAAGCACATAAAAGAGTTCATGCAGAAATGAAATCCATGGGAGAATCTGAGCAGAAGAAGAAGGCAGCAGCAGCAGATAGTATTTCATTTGGTCCTGCAAGGTACAGAAAATACAGTATTGAGGAAGTAGAAGAAGCAACAAATTTCTTTTCCAACTCTCTCAAGATAGGTGAAGGAGGTTATGGACCAGTCTATAGGGCTGAACTAGATCACACACCAGTTGCAATAAAAGTGTTGAAACCAGATGCAGCTCAAGGACGGTCACAGTTTCAGCAAGAGGTTGAAGTGCTAAGTTGCATAAGGCATCCAAATATGGTTCTCCTTCTTGGAGCTTGCCCTGAGTATGGTTGCCTAGTGTATGAACACATGGCTAATGGAAGCTTGGATGATTGCCTATTCCGGAGAAATAAAAACATACCAGTTCTTCCCTGGCAGTTAAGATTCCGAATTGCAGCAGAGATTGCCACTGGCCTCCTTTTCCTTCACCAGACAAAACCAGAAGCATTGGTGCACCGTGACTTAAAACCCGGAAACATTTTGCTTGACCGTAACTTTGTCAGCAAGATCAGTGATGTGGGGTTGGCCAGGCTTGTCCCTCCTTCAGTTGCAGACACTGTGACACAGTACCGCATGACAGCAACTGCTGGAACATTCTGTTACATTGACCCTGAGTACCAGCAAACGGGCATGCTAGGAATCAAATCTGATATTTACTCACTGGGAATCATGCTTCTACAGATAATAACAGCCAAGTCACCAATGGGTTTGACTCACCATGTTTCAAGAGCTATTGAGAGGGGTACTTTTGCTGAGATGCTTGATCCAGCTATTGAGGATTGGCCAGTTGAACATGCATTGCATTTTGCCAAGATTTCTCTGCAATGTGCAGAAATGAGAAGAAAAGATAGACCTGATCTTGGGAAAGTTGTATTACCTGAGCTCAACAAACTCAGAGATTTTGCTGAAGAAAACATGCCAATGATGATGATGATGTTCGGTGGTGGTGGAGGATACACTTCAAGAAATAACATGAATTTCTCACGCTCCACATTTTCCTCCTCAGTTCAAGACTCTATGAGTGAATCCCAGTCGCTGTCTGGAATGTCTGGATATGAAAGCCGATCAAGCACATCGTCAATTGGAAAAATGTAG 2403 0.4328 MSRSIIEKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLMHVRQRASSIPTPTGNHVSVDVNDDVARAYMQQMDNESRELFASFRVFCNRKSIQCKEVLLEDTDISKAIMESINTYSIELLVLGAPSRSGLVRRFRTTDVPSVVSKGAPQFCTVYIISKGKISSVRTATAPLPKPTPRNNTMQPQHFQNPERMDTQLIRNAPPRRSAERQAYIARKQVDEEEIISPFTRAGPGRPILRSYESSIPDSDISFVSSGRPSIDRMFPSMYDDLDSGIAPPRLSSGSDYDVRSFGSSFSGAKSIDQGDYSFSSQDSGMSMSSSRLSNGDDVEAEMRRLRLELKQTMEMYSTACKEALTAKQKTLELQRWKLEEQRKFEDARLAEETALAIAEKERAKCKVAMEAAEASRKYAELEAHKRVHAEMKSMGESEQKKKAAAADSISFGPARYRKYSIEEVEEATNFFSNSLKIGEGGYGPVYRAELDHTPVAIKVLKPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFRRNKNIPVLPWQLRFRIAAEIATGLLFLHQTKPEALVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTATAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIITAKSPMGLTHHVSRAIERGTFAEMLDPAIEDWPVEHALHFAKISLQCAEMRRKDRPDLGKVVLPELNKLRDFAEENMPMMMMMFGGGGGYTSRNNMNFSRSTFSSSVQDSMSESQSLSGMSGYESRSSTSSIGKM. 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06648 800 Coils Coil 391 411 - -
Seca12g06648 800 CDD STK_N 15 167 - -
Seca12g06648 800 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 144 - -
Seca12g06648 800 Gene3D HUPs 14 164 IPR014729 -
Seca12g06648 800 Gene3D Phosphorylase Kinase; domain 1 448 539 - -
Seca12g06648 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Seca12g06648 800 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 440 539 - -
Seca12g06648 800 MobiDBLite consensus disorder prediction 766 800 - -
Seca12g06648 800 SUPERFAMILY Protein kinase-like (PK-like) 448 727 IPR011009 -
Seca12g06648 800 Gene3D Transferase(Phosphotransferase) domain 1 540 746 - -
Seca12g06648 800 SMART serkin_6 467 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06648 800 MobiDBLite consensus disorder prediction 308 333 - -
Seca12g06648 800 Pfam Universal stress protein family 14 153 IPR006016 -
Seca12g06648 800 FunFam U-box domain-containing protein 51 540 741 - -
Seca12g06648 800 Coils Coil 357 377 - -
Seca12g06648 800 MobiDBLite consensus disorder prediction 308 331 - -
Seca12g06648 800 ProSiteProfiles Protein kinase domain profile. 467 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06648 800 PANTHER OS02G0152300 PROTEIN 15 758 - -
Seca12g06648 800 Coils Coil 331 351 - -
Seca12g06648 800 Pfam Protein tyrosine and serine/threonine kinase 472 726 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06648 Seca-Chr12 158564024 158568895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06648 7 754 Receptor kinase-like Gene Family AT1G78940 54.557 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca12g06648 PK_Tyr_Ser-Thr 4.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06648 - - gmx:100803837 1224.15